dovetail-genomics / Micro-C
Micro-C QC and data analysis
☆15Updated last year
Alternatives and similar repositories for Micro-C:
Users that are interested in Micro-C are comparing it to the libraries listed below
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- ☆24Updated 3 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆69Updated last year
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆63Updated 3 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆55Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Tutorial Website☆56Updated 4 years ago
- ☆31Updated 8 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- ATAC-seq processing pipeline☆32Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆20Updated last month
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆44Updated 6 months ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆16Updated 4 months ago
- Analysis of Paired-Tag datasets☆39Updated last year
- scripts for analyzing the CVDC data.☆17Updated 5 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated last year
- HiC uniform processing pipeline☆58Updated last year
- ☆10Updated 5 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆22Updated last month
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated 10 months ago
- release version☆51Updated 2 years ago
- Package for analysis and characterization of differential TADs☆23Updated 2 years ago
- Genome-wide contact analysis using sklearn☆60Updated 10 months ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- A self-contained repository of all code needed for SPRITE analysis☆20Updated 3 years ago
- Scripts + resources for analyzing combinatorial Hi-C data☆28Updated 5 years ago