4dn-dcic / hic2cool
Lightweight converter between hic and cool contact matrices.
☆67Updated 6 months ago
Alternatives and similar repositories for hic2cool:
Users that are interested in hic2cool are comparing it to the libraries listed below
- A modular Hi-C mapping pipeline☆88Updated last month
- Extract 3D contacts (.pairs) from sequencing alignments☆106Updated this week
- dcHiC: Differential compartment analysis for Hi-C datasets☆64Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆69Updated last year
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆78Updated 2 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆59Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆108Updated 3 years ago
- Genome-wide contact analysis using sklearn☆60Updated 9 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆80Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- HiC uniform processing pipeline☆57Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆81Updated 4 months ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 7 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆36Updated 11 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated last year
- Allele-specific alignment sorting☆54Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆63Updated 2 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆79Updated 11 months ago
- Publication quality NGS track plotting☆109Updated 2 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆55Updated last year
- Quantification of transposable element expression using RNA-seq☆64Updated 11 months ago
- FAN-C: Framework for the ANalysis of C-like data☆108Updated 10 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- A self-contained repository of all code needed for SPRITE analysis☆20Updated 3 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆100Updated 2 weeks ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆65Updated last month
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆45Updated last month
- Ultraperformant reimplementation of SICER☆57Updated 3 years ago