4dn-dcic / hic2cool
Lightweight converter between hic and cool contact matrices.
☆67Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for hic2cool
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆67Updated last year
- Genome-wide contact analysis using sklearn☆59Updated 8 months ago
- A modular Hi-C mapping pipeline☆87Updated 11 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆104Updated last month
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆78Updated 3 weeks ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆79Updated 2 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆62Updated 10 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆107Updated 3 years ago
- HiC uniform processing pipeline☆57Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆36Updated 9 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 7 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆27Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- A self-contained repository of all code needed for SPRITE analysis☆20Updated 3 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆62Updated last week
- Publication quality NGS track plotting☆108Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆76Updated 3 months ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆45Updated 3 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- Single cell Nanopore sequencing data for Genotype and Phenotype☆40Updated 2 months ago
- Software for Quantifying Interspersed Repeat Expression☆49Updated 2 years ago
- Tutorial Website☆53Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆44Updated 7 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated 4 months ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆64Updated 6 months ago