Package for analysis and characterization of differential TADs
☆27Jul 15, 2026Updated last week
Alternatives and similar repositories for TADCompare
Users that are interested in TADCompare are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Jun 7, 2019Updated 7 years ago
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated 2 years ago
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 3 years ago
- The tools for your .cool's☆167Mar 19, 2026Updated 4 months ago
- ☆29Apr 23, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Docker for 4DN Hi-C processing pipeline☆61Nov 26, 2024Updated last year
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Jan 26, 2021Updated 5 years ago
- FAN-C: Framework for the ANalysis of C-like data☆121Mar 13, 2024Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆23May 11, 2023Updated 3 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆52Apr 12, 2019Updated 7 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- A collection of tools for Hi-C data analysis☆648Jul 18, 2026Updated last week
- ☆23Jul 27, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python implementation for BH-FDR and HiCCUPS☆54Dec 29, 2025Updated 6 months ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 7 months ago
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- ☆22Aug 11, 2020Updated 5 years ago
- Jupyter notebook based genomic data visualization toolkit.☆259Jun 8, 2026Updated last month
- ☆25May 14, 2021Updated 5 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆27Updated this week
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆275Jul 17, 2025Updated last year
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tools for processing HIC data.☆11May 21, 2021Updated 5 years ago
- Micro-C QC and data analysis☆17Aug 1, 2023Updated 2 years ago
- A (very) simple script to QC Hi-C data.☆27Feb 25, 2026Updated 5 months ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆17Jun 17, 2025Updated last year
- A cross-platform method for chromatin contact normalization☆16Dec 29, 2025Updated 6 months ago
- A toolkit for analyzing architectural stripes☆23Dec 1, 2024Updated last year
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆92Jan 28, 2025Updated last year
- Architectural stripe detection from 3D genome conformation data☆19Sep 15, 2025Updated 10 months ago
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Repository for pipeline code☆26Feb 28, 2024Updated 2 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 12 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Jun 27, 2025Updated last year
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆82Oct 31, 2024Updated last year
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- Extract data quickly from Juicebox via straw☆70Apr 6, 2025Updated last year
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆213May 19, 2018Updated 8 years ago