dozmorovlab / TADCompare
Package for analysis and characterization of differential TADs
☆23Updated 2 years ago
Alternatives and similar repositories for TADCompare:
Users that are interested in TADCompare are comparing it to the libraries listed below
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- ☆24Updated 3 years ago
- Tutorial Website☆57Updated 4 years ago
- ATAC-seq processing pipeline☆32Updated 2 years ago
- scripts for analyzing the CVDC data.☆17Updated 5 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated 11 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆61Updated last year
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆56Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- ☆36Updated 5 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated last week
- 4C-seq processing pipeline☆23Updated 10 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 7 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆63Updated 3 months ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆69Updated last year
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Updated last year
- Docker for 4DN Hi-C processing pipeline☆59Updated 3 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆22Updated 2 months ago
- Links to ATAC-seq analysis tools☆60Updated 3 years ago
- release version☆50Updated 2 years ago
- ☆54Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated last year
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆63Updated last year