HiChiP QC and data analysis
☆13Mar 12, 2024Updated 2 years ago
Alternatives and similar repositories for HiChiP
Users that are interested in HiChiP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Micro-C QC and data analysis☆16Aug 1, 2023Updated 2 years ago
- A Python implementation of the original DI domain caller☆12Aug 2, 2020Updated 5 years ago
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 2 years ago
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆22Jul 19, 2024Updated last year
- Foundation of vector-like and list-like containers in Bioconductor☆17Oct 30, 2025Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- A modular Hi-C mapping pipeline☆101Dec 5, 2024Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆77Jul 22, 2025Updated 8 months ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆14Jun 9, 2021Updated 4 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Jul 11, 2022Updated 3 years ago
- Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.☆12Sep 12, 2025Updated 6 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Jun 7, 2019Updated 6 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- Lightweight converter between hic and cool contact matrices.☆75Jul 15, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- TELOmere SEARCH in Long sequencing Reads☆12Dec 26, 2025Updated 3 months ago
- Scripts for processing sci-RNA-seq/sci-ATAC-seq/sci-CAR reads processing☆15Dec 12, 2018Updated 7 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Aug 5, 2020Updated 5 years ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆110Mar 6, 2026Updated 3 weeks ago
- Statistically Significant loops from HiChIP data☆46Apr 17, 2024Updated last year
- ☆16Aug 14, 2024Updated last year
- Programming for Biology @ CSHL 2023☆14Oct 17, 2025Updated 5 months ago
- The world's first Dockerfile-based Autonomous Coding Agent☆14Apr 1, 2025Updated 11 months ago
- ☆14Apr 19, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆13Nov 4, 2022Updated 3 years ago
- Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibilit…☆12Jun 3, 2025Updated 9 months ago
- The tools for your .cool's☆162Mar 19, 2026Updated last week
- ☆18Jul 15, 2025Updated 8 months ago
- A collection of tools for Hi-C data analysis☆633Mar 15, 2026Updated last week
- CADD-SV – a framework to score the effect of structural variants☆18Feb 11, 2026Updated last month
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆80Jan 24, 2025Updated last year
- An easy-to-use Hi-C data processing software supporting distributed computation.☆62Aug 6, 2024Updated last year
- ☆11Oct 4, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Discovery of communities in Pore-C concatemers☆15Feb 12, 2025Updated last year
- scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data☆10Jul 25, 2022Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Feb 9, 2021Updated 5 years ago
- ☆32Dec 29, 2023Updated 2 years ago
- Advanced steps of the OSCA book☆14Nov 19, 2025Updated 4 months ago
- A container (S4 class) for matrix-like assays☆36Feb 5, 2026Updated last month
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Jun 17, 2025Updated 9 months ago