dovetail-genomics / HiChiP
HiChiP QC and data analysis
☆12Updated 10 months ago
Alternatives and similar repositories for HiChiP:
Users that are interested in HiChiP are comparing it to the libraries listed below
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆45Updated last month
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- Full-length transcriptome splicing and mutation analysis☆76Updated 7 months ago
- Discovery of communities in Pore-C concatemers☆12Updated this week
- Python library for processing and visualizing Hi-C data☆20Updated 4 years ago
- ☆24Updated 3 years ago
- Software for Quantifying Interspersed Repeat Expression☆53Updated 2 years ago
- Statistically Significant loops from HiChIP data☆40Updated 9 months ago
- scripts for analyzing the CVDC data.☆17Updated 5 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆69Updated last year
- Tutorial Website☆55Updated 3 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆63Updated 2 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆44Updated 2 weeks ago
- HiC uniform processing pipeline☆58Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- Lightweight converter between hic and cool contact matrices.☆67Updated 6 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆18Updated this week
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- Micro-C QC and data analysis☆15Updated last year
- SingleCell Nanopore sequencing data analysis☆53Updated last month
- A Perl/R pipeline for plotting metagenes☆36Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- ☆53Updated 3 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆65Updated last year
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆33Updated last month