dovetail-genomics / HiChiP
HiChiP QC and data analysis
☆13Updated last year
Alternatives and similar repositories for HiChiP
Users that are interested in HiChiP are comparing it to the libraries listed below
Sorting:
- SingleCell Nanopore sequencing data analysis☆59Updated 5 months ago
- ☆58Updated 3 years ago
- Software for Quantifying Interspersed Repeat Expression☆55Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆42Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆43Updated last month
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- 4C-seq processing pipeline☆23Updated 2 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆46Updated 2 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆52Updated 2 weeks ago
- Python library for processing and visualizing Hi-C data☆20Updated 4 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆107Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- TEspeX - pipeline for Transposable Elements expression quantification☆20Updated last year
- Package for analysis and characterization of differential TADs☆23Updated 3 years ago
- ☆61Updated 9 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 3 months ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆18Updated 2 weeks ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆64Updated last year
- ☆37Updated 5 years ago
- ☆24Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago