dovetail-genomics / HiChiPView external linksLinks
HiChiP QC and data analysis
☆13Mar 12, 2024Updated last year
Alternatives and similar repositories for HiChiP
Users that are interested in HiChiP are comparing it to the libraries listed below
Sorting:
- Micro-C QC and data analysis☆16Aug 1, 2023Updated 2 years ago
- A Python implementation of the original DI domain caller☆12Aug 2, 2020Updated 5 years ago
- Foundation of vector-like and list-like containers in Bioconductor☆17Oct 30, 2025Updated 3 months ago
- A modular Hi-C mapping pipeline☆101Dec 5, 2024Updated last year
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆22Jul 19, 2024Updated last year
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 2 years ago
- ☆15Feb 6, 2026Updated last week
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Jun 7, 2019Updated 6 years ago
- ☆32Dec 29, 2023Updated 2 years ago
- Statistically Significant loops from HiChIP data☆46Apr 17, 2024Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆77Jul 22, 2025Updated 6 months ago
- ☆18Jul 15, 2025Updated 6 months ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆79Jan 24, 2025Updated last year
- ☆43Dec 4, 2025Updated 2 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 4 years ago
- A container (S4 class) for matrix-like assays☆36Feb 5, 2026Updated last week
- The tools for your .cool's☆160Jul 7, 2025Updated 7 months ago
- TELOmere SEARCH in Long sequencing Reads☆12Dec 26, 2025Updated last month
- Kinase-Substrate Enrichment Analysis (KSEA) App☆10May 2, 2017Updated 8 years ago
- Documentation for MoBa Genetics data release☆11Jan 17, 2022Updated 4 years ago
- ☆11Feb 3, 2026Updated last week
- An R package for climate data post-processing (part of the climate4R bundle)☆12Jan 21, 2026Updated 3 weeks ago
- scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data☆10Jul 25, 2022Updated 3 years ago
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Dec 16, 2020Updated 5 years ago
- Programming for Biology @ CSHL 2023☆14Oct 17, 2025Updated 3 months ago
- Personalized Network-based Anti-Cancer Therapy Appointment☆10Dec 22, 2025Updated last month
- Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibilit…☆12Jun 3, 2025Updated 8 months ago
- ☆16Jun 9, 2025Updated 8 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Feb 9, 2021Updated 5 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Jul 11, 2022Updated 3 years ago
- 模型加速/模型压缩(已完成所有Lab)☆11Dec 24, 2023Updated 2 years ago
- ☆11Oct 19, 2024Updated last year
- Computer Vision Fall 2019 by Chiu-San Fu@ CSIE NTU Taiwan☆10Jan 11, 2020Updated 6 years ago
- The Functional Analysis through Hidden Markov Models Software and Server☆14Nov 6, 2014Updated 11 years ago
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- extract gene TSS/TES site form gencode/ensembl/gencode database GTF file and export bed format file.☆11Jan 24, 2022Updated 4 years ago
- This is my personal portfolio. Uses React three fiber to create a 3d underwater scene with orbital controls.☆15Jan 18, 2025Updated last year
- A collaborative guidebook for reusable data best practices☆13Mar 5, 2023Updated 2 years ago