deeptools / HiCExplorerLinks
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
☆256Updated last month
Alternatives and similar repositories for HiCExplorer
Users that are interested in HiCExplorer are comparing it to the libraries listed below
Sorting:
- Fast alignment and preprocessing of chromatin profiles☆203Updated 3 weeks ago
- SUPPA: Fast quantification of splicing and differential splicing☆279Updated last year
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆203Updated 7 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆258Updated 6 months ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆176Updated last week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆236Updated 3 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆219Updated last month
- ☆154Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆208Updated last month
- Full-Length Alternative Isoform analysis of RNA☆233Updated this week
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆188Updated 5 years ago
- The tools for your .cool's☆153Updated last month
- FAN-C: Framework for the ANalysis of C-like data☆117Updated last year
- A structural variation pipeline for short-read sequencing☆192Updated this week
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆144Updated 2 years ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆170Updated 2 weeks ago
- Discovering known and novel miRNAs from small RNA sequencing data☆153Updated last year
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆418Updated last year
- parallel fastq-dump wrapper☆299Updated 2 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆216Updated last week
- ☆270Updated 9 months ago
- Application for making ENCODE Blacklists☆317Updated 4 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆273Updated last year
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆166Updated 3 months ago
- ☆149Updated 3 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆245Updated this week
- A collection of scripts and notes related to genomics and bioinformatics☆216Updated last month
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago