XiaoTaoWang / HiCPeaksLinks
A Python implementation for BH-FDR and HiCCUPS
☆49Updated 2 months ago
Alternatives and similar repositories for HiCPeaks
Users that are interested in HiCPeaks are comparing it to the libraries listed below
Sorting:
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆73Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆65Updated last year
- Genome-wide contact analysis using sklearn☆68Updated last year
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated 7 months ago
- Lightweight converter between hic and cool contact matrices.☆73Updated 11 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated last year
- Extract 3D contacts (.pairs) from sequencing alignments☆113Updated last week
- ☆24Updated 4 years ago
- Package for analysis and characterization of differential TADs☆23Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- Docker for 4DN Hi-C processing pipeline☆60Updated 6 months ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆23Updated 2 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆86Updated 2 years ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆15Updated 3 years ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆60Updated 10 months ago
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆46Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆68Updated 7 months ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 2 months ago
- Micro-C QC and data analysis☆16Updated last year
- snakemake pipeline for Hi-C post-processing☆22Updated 11 months ago