Dowell-Lab / TFEALinks
Transcription Factor Enrichment Analysis
☆34Updated last month
Alternatives and similar repositories for TFEA
Users that are interested in TFEA are comparing it to the libraries listed below
Sorting:
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆31Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- BAGEL software☆27Updated last year
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 4 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated last year
- RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to iden…☆9Updated 6 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated 11 months ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 3 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- IDR☆31Updated 2 years ago
- ☆20Updated 5 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 4 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆26Updated 2 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆39Updated 8 months ago
- RiboPlotR package for Ribo-plot☆15Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- ☆22Updated 3 months ago
- binned motif enrichment analysis and visualisation☆40Updated last month