Dowell-Lab / TFEALinks
Transcription Factor Enrichment Analysis
☆36Updated last month
Alternatives and similar repositories for TFEA
Users that are interested in TFEA are comparing it to the libraries listed below
Sorting:
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 3 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- An Optimized Nested TAD caller for Hi-C data☆25Updated 4 years ago
- ☆23Updated 10 months ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 6 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- IDR☆30Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 8 months ago
- ☆23Updated 4 years ago
- ☆20Updated 6 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆42Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- binned motif enrichment analysis and visualisation☆44Updated 2 months ago
- Detection and couting alternative TSS in single cells☆16Updated last year
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Motif manipulation functions for R.☆30Updated 3 months ago
- chia pet analysis software☆25Updated 7 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 11 months ago
- RAGE-seq scripts☆18Updated 4 years ago
- Tutorial Website☆63Updated 4 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆28Updated 3 years ago