Dowell-Lab / TFEALinks
Transcription Factor Enrichment Analysis
☆34Updated last month
Alternatives and similar repositories for TFEA
Users that are interested in TFEA are comparing it to the libraries listed below
Sorting:
- RiboPlotR package for Ribo-plot☆15Updated 2 weeks ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 4 months ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆32Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- snakemake pipeline for Hi-C post-processing☆22Updated 11 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated 3 weeks ago
- Processing and plotting tools for genomics data☆20Updated last month
- Comprehensive and scalable differential splicing analyses☆17Updated 3 months ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 5 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 4 months ago
- BAGEL software☆27Updated last year
- IDR☆31Updated 2 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- ☆39Updated 9 months ago
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- ☆23Updated 4 years ago
- ☆22Updated 4 months ago
- binned motif enrichment analysis and visualisation☆40Updated last month
- Motif manipulation functions for R.☆28Updated 2 months ago