Castelo-Branco-lab / scCut-Tag_2020Links
Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)
☆13Updated 4 years ago
Alternatives and similar repositories for scCut-Tag_2020
Users that are interested in scCut-Tag_2020 are comparing it to the libraries listed below
Sorting:
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆25Updated 8 months ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Updated 3 years ago
- Network construction Algorithm☆22Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- ☆12Updated 2 years ago
- ☆18Updated 2 years ago
- ☆47Updated 5 years ago
- comprehensive analysis of single-cell transcriptomics data☆25Updated last month
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 9 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- ☆25Updated 2 months ago
- ☆24Updated 5 months ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆28Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- ☆39Updated 4 months ago
- ☆48Updated last year
- A record of the analysis pipelines used to create the HTAPP data☆34Updated 9 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- R package of CSOmap(developing☆13Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 3 years ago
- ☆12Updated 4 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ☆33Updated 11 months ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆17Updated last year