Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)
☆16Apr 2, 2026Updated 7 months ago
Alternatives and similar repositories for scCut-Tag_2020
Users that are interested in scCut-Tag_2020 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Nov 20, 2023Updated 2 years ago
- Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.☆12Sep 12, 2025Updated last year
- mouse_fullStack_annotations☆16Jun 29, 2023Updated 3 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- Pipeline for analysis of Dropseq single cell data☆11Nov 14, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆18May 12, 2023Updated 3 years ago
- Micro-C QC and data analysis☆18Aug 1, 2023Updated 3 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆22Jul 22, 2025Updated last year
- Iteratively Adjusted Surrogate Variable Analysis☆10Aug 23, 2021Updated 5 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆14Apr 14, 2026Updated 6 months ago
- computational tool to identify trasposable element insertions using Hi-C data☆10Sep 17, 2020Updated 6 years ago
- Repository for reproducing figures and tables for the study titled, "Mapping spatial organization and genetic cell state regulators to ta…☆10Sep 5, 2024Updated 2 years ago
- Analysis pipeline for CUT&TAG data☆25Sep 2, 2020Updated 6 years ago
- ☆10Oct 7, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Scripts for processing sci-RNA-seq/sci-ATAC-seq/sci-CAR reads processing☆15Dec 12, 2018Updated 7 years ago
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆26Oct 6, 2026Updated 3 weeks ago
- Reconstruct the three-dimensional structure of extrachromosomal DNA☆14Sep 2, 2026Updated 2 months ago
- EagleC2: Deep learning–powered discovery and screening of complex, fine-scale, and heterogeneity-defining structural variations from Hi-C…☆19Sep 21, 2026Updated last month
- scripts for analysis associated with Cas9Enrichment publication☆12Feb 10, 2020Updated 6 years ago
- ☆14Feb 2, 2023Updated 3 years ago
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆14Nov 4, 2022Updated 3 years ago
- Scripts for analyzing ATAC-STARR data.☆10Feb 5, 2024Updated 2 years ago
- A public clone of the HypoMap Figure & analysis repository.☆12Sep 26, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Detecting differentially interacting genomic regions from Hi-C contact maps☆12Mar 11, 2024Updated 2 years ago
- Shell wrappers for bulk and 10X single cell NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, GWAS, etc.☆17Oct 12, 2026Updated 3 weeks ago
- Simulation of somatically rearranged genomes☆11Jul 8, 2017Updated 9 years ago
- Minimal scripts to reproduce the RADICL-seq analysis of the Nature Communications manuscript☆11Jan 30, 2020Updated 6 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆79Jun 24, 2026Updated 4 months ago
- ☆24Mar 29, 2023Updated 3 years ago
- Tools used in Human Cell Landscape(HCL)☆56Jul 30, 2020Updated 6 years ago
- A cross-platform method for chromatin contact normalization☆18Dec 29, 2025Updated 10 months ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- CellRank's reproducibility repository.☆18Jan 13, 2022Updated 4 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- ☆10Oct 31, 2021Updated 5 years ago
- SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/☆24Sep 19, 2021Updated 5 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- Analysis code for the TAP-seq manuscript.☆13Jun 25, 2021Updated 5 years ago