Castelo-Branco-lab / scCut-Tag_2020View external linksLinks
Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)
☆13Jun 9, 2021Updated 4 years ago
Alternatives and similar repositories for scCut-Tag_2020
Users that are interested in scCut-Tag_2020 are comparing it to the libraries listed below
Sorting:
- ☆12Nov 20, 2023Updated 2 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- ☆18May 12, 2023Updated 2 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆21Jul 22, 2025Updated 6 months ago
- ☆23Mar 29, 2023Updated 2 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆12Jun 21, 2024Updated last year
- A public clone of the HypoMap Figure & analysis repository.☆11Sep 26, 2022Updated 3 years ago
- Whole genome workflows☆12Nov 9, 2024Updated last year
- Peak caller for CUT&TAG data☆30Aug 18, 2022Updated 3 years ago
- ☆11May 26, 2023Updated 2 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- ☆13Feb 14, 2023Updated 3 years ago
- ☆15Jun 2, 2021Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 3 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- mouse_fullStack_annotations☆13Jun 29, 2023Updated 2 years ago
- ☆12Nov 9, 2022Updated 3 years ago
- Tools used in Human Cell Landscape(HCL)☆56Jul 30, 2020Updated 5 years ago
- Image processing pipeline for spatial projects☆17Aug 3, 2023Updated 2 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- ☆12Apr 16, 2021Updated 4 years ago
- 该存储库，主要存放根据自己所掌握的NGS差异表达分析技术方法为主，具体的实验以及方案设计等将不会存放在此存储库。☆15May 19, 2020Updated 5 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated 9 months ago
- Scripts for processing sci-RNA-seq/sci-ATAC-seq/sci-CAR reads processing☆15Dec 12, 2018Updated 7 years ago
- Micro-C QC and data analysis☆16Aug 1, 2023Updated 2 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Apr 13, 2021Updated 4 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- Improved Ribo-seq enables identification of cryptic translation events☆17Feb 13, 2018Updated 8 years ago
- ☆11Feb 18, 2019Updated 6 years ago
- Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…☆22Aug 19, 2022Updated 3 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Analyzing chromatin accessibility data in R☆18Jun 23, 2023Updated 2 years ago
- Repository for supplemental material of manuscripts☆18Jun 30, 2021Updated 4 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Jun 21, 2022Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Oct 27, 2022Updated 3 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 3 years ago