nf-core / hic
Analysis of Chromosome Conformation Capture data (Hi-C)
☆94Updated 3 weeks ago
Alternatives and similar repositories for hic:
Users that are interested in hic are comparing it to the libraries listed below
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆137Updated last year
- Fast alignment and preprocessing of chromatin profiles☆195Updated last month
- ☆81Updated 2 weeks ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆107Updated last year
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆154Updated this week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆111Updated this week
- A (mostly) universal methylation extractor for BS-seq experiments.☆168Updated 6 months ago
- Detection of m6A from direct RNA-Seq data☆113Updated 4 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆68Updated this week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆200Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆200Updated 2 months ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆146Updated 4 months ago
- ASCAT R package☆173Updated last month
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆106Updated 2 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆138Updated 11 months ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆195Updated this week
- Tools for plotting methylation data in various ways☆136Updated this week
- ☆79Updated 2 weeks ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆62Updated 2 months ago
- A small-RNA sequencing analysis pipeline☆77Updated last week
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆87Updated 3 weeks ago
- Publication quality NGS track plotting☆109Updated 2 years ago
- software tools for haplotype assembly from sequence data☆214Updated 5 months ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆156Updated this week
- BAM Statistics, Feature Counting and Annotation☆146Updated 2 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆208Updated 6 months ago
- A structural variation pipeline for short-read sequencing☆175Updated this week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆155Updated last year
- Somatic structural variant caller for long-read data☆53Updated last month