nf-core / hicLinks
Analysis of Chromosome Conformation Capture data (Hi-C)
☆99Updated 3 weeks ago
Alternatives and similar repositories for hic
Users that are interested in hic are comparing it to the libraries listed below
Sorting:
- ☆95Updated this week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆129Updated 3 weeks ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆167Updated last week
- Technology agnostic long read analysis pipeline for transcriptomes☆143Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆152Updated 2 years ago
- Fast alignment and preprocessing of chromatin profiles☆202Updated last week
- A (mostly) universal methylation extractor for BS-seq experiments.☆171Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated 2 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆227Updated this week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆230Updated last month
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆86Updated 2 years ago
- Publication quality NGS track plotting☆113Updated 2 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆149Updated 10 months ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 9 months ago
- Detection of m6A from direct RNA-Seq data☆124Updated last month
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆211Updated last week
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆79Updated this week
- Extract 3D contacts (.pairs) from sequencing alignments☆113Updated last week
- Allele-specific alignment sorting☆58Updated 2 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆110Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆114Updated 4 months ago
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago
- cDNA read preprocessing☆74Updated 11 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆169Updated last year
- Software for Quantifying Interspersed Repeat Expression☆59Updated 3 years ago
- Tools for plotting methylation data in various ways☆154Updated this week
- A tool for somatic structural variant calling using long reads☆136Updated last month
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆250Updated this week