nf-core / hicLinks
Analysis of Chromosome Conformation Capture data (Hi-C)
☆105Updated 2 months ago
Alternatives and similar repositories for hic
Users that are interested in hic are comparing it to the libraries listed below
Sorting:
- Technology agnostic long read analysis pipeline for transcriptomes☆156Updated 2 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆175Updated 2 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆149Updated 2 weeks ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆176Updated last year
- Extract 3D contacts (.pairs) from sequencing alignments☆124Updated last week
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 3 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆89Updated last week
- ☆110Updated 2 months ago
- FEELnc : FlExible Extraction of LncRNA☆93Updated 6 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆124Updated this week
- Publication quality NGS track plotting☆117Updated 4 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago
- HiC uniform processing pipeline☆63Updated 2 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆159Updated 6 months ago
- Detection of m6A from direct RNA-Seq data☆131Updated 8 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆68Updated 9 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆30Updated last week
- A small-RNA sequencing analysis pipeline☆98Updated last month
- Detecting contamination in NGS data and multi-species analysis☆82Updated 3 months ago
- Fast alignment and preprocessing of chromatin profiles☆211Updated 3 weeks ago
- Allele-specific alignment sorting☆61Updated 3 years ago
- Somatic structural variant caller for long-read data☆87Updated 2 months ago
- Long read production pipelines☆151Updated this week
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆109Updated 2 months ago
- Software for Quantifying Interspersed Repeat Expression☆65Updated 3 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆224Updated last week
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆116Updated last month
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 2 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 8 months ago