HenrikBengtsson / TopDom
R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
☆20Updated last year
Related projects ⓘ
Alternatives and complementary repositories for TopDom
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- ☆20Updated 4 years ago
- ☆23Updated 3 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- ☆15Updated 2 years ago
- ☆19Updated last year
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 4 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆19Updated last year
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 7 months ago
- ☆35Updated 5 years ago
- ☆16Updated 4 years ago
- A toolkit for analyzing architectural stripes☆19Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆26Updated last year
- scripts for analyzing the CVDC data.☆17Updated 4 years ago
- Long read to rMATS☆31Updated last year
- ☆15Updated 4 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated last month
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆23Updated 2 months ago
- Predicting regulatory DNA elements based on epigenomic signatures☆27Updated 4 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 9 months ago
- R package for DNA methylation analysis☆17Updated 3 months ago
- 4C-seq processing pipeline☆22Updated 7 months ago