HenrikBengtsson / TopDomLinks
R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
☆21Updated 2 years ago
Alternatives and similar repositories for TopDom
Users that are interested in TopDom are comparing it to the libraries listed below
Sorting:
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- ☆22Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 2 years ago
- ☆21Updated 4 years ago
- ☆37Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆46Updated 2 years ago
- ☆19Updated 2 years ago
- ☆23Updated 4 years ago
- ☆15Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- 4C-seq processing pipeline☆23Updated 4 months ago
- Genomic Association Tester☆31Updated 2 years ago
- BISulfite-seq CUI Toolkit☆23Updated 2 months ago
- ☆28Updated 7 months ago
- A Python implementation of the original DI domain caller☆12Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 10 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Long read to rMATS☆32Updated 2 years ago
- ☆23Updated 7 months ago
- scripts for analyzing the CVDC data.☆19Updated 5 years ago
- ☆36Updated 2 years ago
- QC report generator for Hi-C pairs file☆12Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated last month
- ☆12Updated 5 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago