open2c / cooltoolsLinks
The tools for your .cool's
☆158Updated 6 months ago
Alternatives and similar repositories for cooltools
Users that are interested in cooltools are comparing it to the libraries listed below
Sorting:
- A modular Hi-C mapping pipeline☆100Updated last year
- Extract 3D contacts (.pairs) from sequencing alignments☆123Updated last week
- FAN-C: Framework for the ANalysis of C-like data☆121Updated last year
- Fast alignment and preprocessing of chromatin profiles☆209Updated last week
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆263Updated 6 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated last year
- Detection of m6A from direct RNA-Seq data☆130Updated 7 months ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆199Updated last week
- HiC uniform processing pipeline☆62Updated 2 years ago
- A cool place to store your Hi-C☆230Updated 3 weeks ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆115Updated last week
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Updated 6 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆148Updated 4 months ago
- Quantification of transposable element expression using RNA-seq☆78Updated last year
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆178Updated last month
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆77Updated 5 months ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆105Updated last month
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆75Updated 2 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆155Updated last year
- Genome-wide contact analysis using sklearn☆72Updated last year
- ☆157Updated 3 years ago
- ☆109Updated last month
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆123Updated 3 months ago
- Publication quality NGS track plotting☆117Updated 3 months ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆223Updated this week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆251Updated 2 weeks ago