ait5 / CNAppLinks
CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-friendly interface. The software uses segmented data from either aCGH, SNP-array, whole-exome sequencing or whole-genome sequencing to assess sample profiles and CNA levels, establishing associations with molecular …
☆20Updated 5 years ago
Alternatives and similar repositories for CNApp
Users that are interested in CNApp are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- ☆13Updated 7 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- ☆14Updated 3 years ago
- RNA editing tests☆17Updated 4 years ago
- ☆47Updated 7 months ago
- Utility functions for FACETS☆38Updated last year
- An R package for predicting HR deficiency from mutation contexts☆29Updated 5 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- Quantifying copy number signatures from absolute copy number profiles☆24Updated 2 weeks ago
- ☆38Updated 5 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆21Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆25Updated last year
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- ☆49Updated last year
- ☆10Updated 3 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago