Alternatives and similar repositories for QUBIC2

Users that are interested in QUBIC2 are comparing it to the libraries listed below

• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated 2 years ago
• XPRESSyourself / XPRESSpipe
  An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
  ☆13Updated last year
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• salbrec / seqQscorer
  ☆22Updated 3 months ago
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆18Updated last month
• NourMarzouka / multiclassPairs
  Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
  ☆12Updated 2 years ago
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated 2 weeks ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆20Updated 2 weeks ago
• Acribbs / TallyNN
  single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)
  ☆13Updated 2 years ago
• xmuyulab / scRNAseq_pipelines
  ☆12Updated 4 years ago
• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆16Updated 8 months ago
• PacificBiosciences / hg002-ccs
  ☆15Updated 4 years ago
• KChen-lab / Texomer
  Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data
  ☆21Updated 5 years ago
• popitsch / rnalib
  rnalib: a python-based transcriptomics library
  ☆11Updated 3 months ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 5 years ago
• yuansliu / minirmd
  ☆12Updated 2 years ago
• zhongzhd / ont_m6a_detection
  ☆10Updated 5 months ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆20Updated 4 months ago
• YuLab-SMU / clusterProfiler_protocol
  omics data analysis using clusterProfiler ;)
  ☆13Updated last year
• gagneurlab / FRASER-analysis
  Accompanying analysis code for the FRASER manuscript
  ☆26Updated 5 years ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆35Updated last year
• Kingsford-Group / ribomap
  ☆13Updated 9 years ago
• NCBI-Hackathons / HLAClustRView
  R package specialized in HLA typing clustering and visualization based on specific similarity metrics
  ☆14Updated 5 years ago
• elkebir-group / cnaviz
  ☆12Updated last year
• pachterlab / qcbc
  ☆20Updated 3 months ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• klovens / juxtapose
  ☆10Updated 3 years ago
• yachielab / Interstellar
  INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads
  ☆18Updated last year
• zd105 / AllEnricher
  A comprehensive gene set function enrichment tool for multiple species.
  ☆14Updated 5 years ago