dekkerlab / cworld-dekker
perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
☆66Updated 5 years ago
Alternatives and similar repositories for cworld-dekker:
Users that are interested in cworld-dekker are comparing it to the libraries listed below
- Tutorial Website☆57Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆25Updated last month
- ☆30Updated 6 years ago
- 4C-seq processing pipeline☆23Updated 11 months ago
- Package for analysis and characterization of differential TADs☆23Updated 2 years ago
- ATAC-seq processing pipeline☆32Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆57Updated last year
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆63Updated last year
- ☆54Updated 3 years ago
- ☆40Updated 2 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated 11 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Updated last year
- Demultiplexes a fastq.☆44Updated 4 years ago
- Links to ATAC-seq analysis tools☆60Updated 3 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆70Updated last year
- ☆51Updated 6 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆62Updated last year
- Estimate locus specific human LINE-1 expression.☆33Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated 2 weeks ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆62Updated 8 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆82Updated 2 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆67Updated last year