ENCODE-DCC / hic-pipelineLinks
HiC uniform processing pipeline
☆60Updated last year
Alternatives and similar repositories for hic-pipeline
Users that are interested in hic-pipeline are comparing it to the libraries listed below
Sorting:
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆87Updated 2 years ago
- ☆58Updated 2 weeks ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated 2 weeks ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆64Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- Quantification of transposable element expression using RNA-seq☆72Updated last year
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated 2 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆113Updated 3 weeks ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆132Updated last month
- Software for Quantifying Interspersed Repeat Expression☆60Updated 3 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆67Updated last year
- ☆62Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆61Updated last year
- FAN-C: Framework for the ANalysis of C-like data☆116Updated last year
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆110Updated 4 months ago
- ☆94Updated this week
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- Lightweight converter between hic and cool contact matrices.☆73Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆71Updated last year
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 weeks ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- Docker for 4DN Hi-C processing pipeline☆61Updated 8 months ago