ENCODE-DCC / hic-pipelineLinks
HiC uniform processing pipeline
☆62Updated 2 years ago
Alternatives and similar repositories for hic-pipeline
Users that are interested in hic-pipeline are comparing it to the libraries listed below
Sorting:
- Quantification of transposable element expression using RNA-seq☆81Updated last year
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago
- ☆60Updated 6 months ago
- Allele-specific alignment sorting☆61Updated 3 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆123Updated 3 weeks ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last month
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆116Updated 3 weeks ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- Software for Quantifying Interspersed Repeat Expression☆64Updated 3 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Publication quality NGS track plotting☆117Updated 3 months ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- release version☆57Updated 3 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆71Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- ☆64Updated 4 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆31Updated 2 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 3 weeks ago
- FEELnc : FlExible Extraction of LncRNA☆93Updated 6 months ago
- FAN-C: Framework for the ANalysis of C-like data☆121Updated last year
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆92Updated 3 months ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆149Updated last week
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆77Updated 6 months ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Updated 2 years ago