ENCODE-DCC / hic-pipelineLinks
HiC uniform processing pipeline
☆59Updated last year
Alternatives and similar repositories for hic-pipeline
Users that are interested in hic-pipeline are comparing it to the libraries listed below
Sorting:
- Allele-specific alignment sorting☆56Updated 2 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆86Updated 2 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 4 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆91Updated 2 weeks ago
- ☆59Updated 3 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆112Updated 4 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆111Updated last month
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 3 months ago
- Quantification of transposable element expression using RNA-seq☆70Updated last year
- ☆61Updated 10 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 10 months ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- Software for Quantifying Interspersed Repeat Expression☆56Updated 2 years ago
- Tutorial Website☆59Updated 4 years ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 8 months ago
- New version of JACUSA -> 2.0☆26Updated 3 weeks ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆65Updated last year
- Lightweight converter between hic and cool contact matrices.☆73Updated 10 months ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- Publication quality NGS track plotting☆113Updated 2 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆113Updated 4 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- A modular Hi-C mapping pipeline☆94Updated 6 months ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆44Updated 2 months ago