A Python implementation of the original DI domain caller
☆13Aug 2, 2020Updated 5 years ago
Alternatives and similar repositories for domaincaller
Users that are interested in domaincaller are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆42Jan 31, 2024Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 3 years ago
- snakemake pipeline for Hi-C post-processing☆22Jun 27, 2024Updated last year
- A toolkit for analyzing architectural stripes☆22Dec 1, 2024Updated last year
- Genome-wide contact analysis using sklearn☆74Mar 23, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Architectural stripe detection from 3D genome conformation data☆19Sep 15, 2025Updated 8 months ago
- scripts for analyzing the CVDC data.☆20Dec 5, 2019Updated 6 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Jun 7, 2019Updated 6 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 6 years ago
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆37Aug 28, 2015Updated 10 years ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆62Aug 6, 2024Updated last year
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆76Oct 21, 2023Updated 2 years ago
- Docker for 4DN Hi-C processing pipeline☆61Nov 26, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆92Jan 28, 2025Updated last year
- A Python implementation for BH-FDR and HiCCUPS☆54Dec 29, 2025Updated 5 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆19Dec 18, 2022Updated 3 years ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 3 weeks ago
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 2 years ago
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆14Nov 4, 2022Updated 3 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆82Jan 24, 2025Updated last year
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆16Dec 26, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- HiChiP QC and data analysis☆13Mar 12, 2024Updated 2 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- The tools for your .cool's☆164Mar 19, 2026Updated 2 months ago
- HiC uniform processing pipeline☆64Nov 8, 2023Updated 2 years ago
- Micro-C QC and data analysis☆16Aug 1, 2023Updated 2 years ago
- HiCDCPlus☆19Jun 6, 2022Updated 3 years ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆82Oct 31, 2024Updated last year
- A reference panel guided topological structure annotation of Hi-C data☆10Mar 23, 2023Updated 3 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- High-performance stochastic modeling of DNA loop extrusion interactions☆18Dec 22, 2025Updated 5 months ago
- Python module for parsing, writing, aligning, and manipulating glycan structrures☆10Apr 16, 2026Updated last month
- ☆18Apr 9, 2026Updated last month
- SIP: Significant Interaction Peak caller☆17Apr 24, 2025Updated last year
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- Hi-C data analysis tool☆13May 31, 2017Updated 8 years ago
- ☆16Apr 16, 2026Updated last month