mdozmorov / HiC_toolsLinks
A collection of tools for Hi-C data analysis
☆594Updated 2 weeks ago
Alternatives and similar repositories for HiC_tools
Users that are interested in HiC_tools are comparing it to the libraries listed below
Sorting:
- ENCODE ATAC-seq pipeline☆424Updated 11 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆471Updated last month
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆412Updated last year
- Intro to ChIPseq using HPC☆309Updated 2 years ago
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆450Updated 7 months ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆191Updated 3 weeks ago
- ENCODE ChIP-seq pipeline☆270Updated last year
- Application for making ENCODE Blacklists☆313Updated 4 years ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆515Updated this week
- ☆394Updated 3 years ago
- 10x Genomics Single Cell Analysis☆424Updated 5 months ago
- GTEx & TOPMed data production and analysis pipelines☆374Updated last month
- Customizable workflows based on snakemake and python for the analysis of NGS data☆399Updated 3 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆826Updated last year
- ☆444Updated 5 years ago
- ChIP-seq analysis notes from Ming Tang☆809Updated 11 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆317Updated 2 years ago
- A repository for setting up a RNAseq workflow☆434Updated 8 years ago
- TCR and BCR assembly from RNA-seq data☆316Updated last week
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆366Updated this week
- RNA-seq workflow using STAR and DESeq2☆342Updated 11 months ago
- Tools to process and analyze deep sequencing data.☆723Updated last week
- MACS -- Model-based Analysis of ChIP-Seq☆748Updated 3 months ago
- parallel fastq-dump wrapper☆298Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆206Updated last week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆423Updated 4 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆425Updated 2 months ago
- A tool to find sequencing data and metadata from public databases.☆580Updated 11 months ago
- Bioinformatics one liners from Ming Tang☆487Updated 4 years ago
- GWAS Tutorial for Beginners☆297Updated last month