mdozmorov / HiC_tools
A collection of tools for Hi-C data analysis
☆549Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for HiC_tools
- Intro to ChIPseq using HPC☆287Updated last year
- Collections of library structure and sequence of popular single cell genomic methods☆428Updated 2 weeks ago
- ENCODE ATAC-seq pipeline☆385Updated 3 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆386Updated 7 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆306Updated last year
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆174Updated 3 weeks ago
- ☆373Updated 2 years ago
- ChIP-seq analysis notes from Ming Tang☆750Updated 3 months ago
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆415Updated 2 months ago
- ☆438Updated 4 years ago
- 10x Genomics Single Cell Analysis☆365Updated 2 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆307Updated this week
- Inferring CNV from Single-Cell RNA-Seq☆565Updated 3 months ago
- Bioinformatics one liners from Ming Tang☆455Updated 4 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆769Updated 4 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆384Updated last week
- A tool to find sequencing data and metadata from public databases.☆548Updated 2 months ago
- scRNAseq analysis notes from Ming Tang☆640Updated last month
- Application for making ENCODE Blacklists☆268Updated 3 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆387Updated 2 weeks ago
- ENCODE ChIP-seq pipeline☆245Updated 8 months ago
- RNA Velocity generalized through dynamical modeling☆418Updated last month
- RNA-seq workflow using STAR and DESeq2☆327Updated 3 months ago
- NicheNet: predict active ligand-target links between interacting cells☆484Updated 2 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆413Updated 5 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆389Updated 2 months ago
- Single cell RNA sequencing analysis course☆195Updated last month
- Analysis of single cell RNA-seq data course☆121Updated 2 years ago
- GTEx & TOPMed data production and analysis pipelines☆342Updated 7 months ago
- TCR and BCR assembly from RNA-seq data☆278Updated this week