ernstlab / mouse_fullStack_annotationsLinks
mouse_fullStack_annotations
☆12Updated 2 years ago
Alternatives and similar repositories for mouse_fullStack_annotations
Users that are interested in mouse_fullStack_annotations are comparing it to the libraries listed below
Sorting:
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆36Updated 3 years ago
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆17Updated 5 months ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆33Updated 5 months ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 2 weeks ago
- ☆18Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 8 months ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- ☆35Updated 3 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 7 months ago
- Fast motif matching in R☆46Updated last year
- ☆68Updated 3 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 5 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆19Updated 2 years ago
- Code and data sharing of Liu et al. 2023 manuscript☆15Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated 2 years ago
- ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed…☆24Updated 3 years ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Updated 3 years ago
- ☆51Updated last year
- scNMT-seq gastrulation☆42Updated 2 years ago
- splicing and feature maps for RBPs☆25Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year