VRam142 / combinatorialHiCLinks
Scripts + resources for analyzing combinatorial Hi-C data
☆30Updated 5 years ago
Alternatives and similar repositories for combinatorialHiC
Users that are interested in combinatorialHiC are comparing it to the libraries listed below
Sorting:
- Notes on single-cell Hi-C technologies, tools, and data☆80Updated 9 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆77Updated last year
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 8 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆86Updated 10 months ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 4 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 2 weeks ago
- Lightweight converter between hic and cool contact matrices.☆73Updated last year
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆89Updated 5 months ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 2 weeks ago
- Cooler demo using a Jupyter notebook Binder☆18Updated 4 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- FAN-C: Framework for the ANalysis of C-like data☆116Updated last year
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆74Updated 6 months ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆110Updated 8 months ago
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- A modular Hi-C mapping pipeline☆97Updated 8 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- Docker for 4DN Hi-C processing pipeline☆61Updated 8 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆71Updated last year
- Estimate locus specific human LINE-1 expression.☆36Updated 2 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆32Updated 4 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆47Updated last month
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆44Updated last year
- code to run sei and obtain sei and sequence class predictions☆106Updated 2 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 8 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 4 months ago
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆77Updated last year
- ☆24Updated 4 years ago