hellosunking / Msuite2Links
Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance
☆10Updated 8 months ago
Alternatives and similar repositories for Msuite2
Users that are interested in Msuite2 are comparing it to the libraries listed below
Sorting:
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Updated 2 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 5 years ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated last month
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- ☆18Updated 4 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆17Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- ☆22Updated last month
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Somatic point mutation caller☆17Updated 9 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 3 weeks ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆14Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- ☆10Updated 2 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆12Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14Updated 4 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 6 months ago