XiaoTaoWang / HiCLift
A fast and efficient tool for converting chromatin interaction data between genome assemblies
☆67Updated last year
Related projects ⓘ
Alternatives and complementary repositories for HiCLift
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- Genome-wide contact analysis using sklearn☆59Updated 7 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆62Updated 10 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆107Updated 3 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆104Updated 3 weeks ago
- Lightweight converter between hic and cool contact matrices.☆67Updated 4 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆79Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆62Updated last week
- Tutorial Website☆53Updated 3 years ago
- Allele-specific alignment sorting☆53Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆36Updated 9 months ago
- A modular Hi-C mapping pipeline☆87Updated 11 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆52Updated last year
- HiC uniform processing pipeline☆57Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- ☆24Updated 3 years ago
- Docker for 4DN Hi-C processing pipeline☆58Updated 3 weeks ago
- A Python implementation for BH-FDR and HiCCUPS☆41Updated 2 weeks ago
- Notes on single-cell Hi-C technologies, tools, and data☆71Updated last month
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- Architectural stripe detection from 3D genome conformation data☆17Updated last year
- Software for Quantifying Interspersed Repeat Expression☆49Updated 2 years ago
- Micro-C QC and data analysis☆12Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆76Updated 3 months ago
- A Perl/R pipeline for plotting metagenes☆35Updated 3 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆44Updated 7 months ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆55Updated 3 months ago