4dn-dcic / docker-4dn-hicLinks
Docker for 4DN Hi-C processing pipeline
☆59Updated 6 months ago
Alternatives and similar repositories for docker-4dn-hic
Users that are interested in docker-4dn-hic are comparing it to the libraries listed below
Sorting:
- Package for analysis and characterization of differential TADs☆23Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆24Updated 4 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Updated 3 years ago
- Tutorial Website☆59Updated 4 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆112Updated 4 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated last week
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 4 months ago
- ☆29Updated 10 months ago
- release version☆53Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- ☆61Updated 10 months ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆22Updated last month
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- IDR☆31Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- ☆30Updated 6 years ago
- ☆43Updated 2 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆65Updated last year
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- Allele-specific alignment sorting☆56Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆91Updated 2 weeks ago