liwenran / DeepTACTLinks
DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning
☆20Updated 4 years ago
Alternatives and similar repositories for DeepTACT
Users that are interested in DeepTACT are comparing it to the libraries listed below
Sorting:
- ☆12Updated 4 years ago
- ☆34Updated 2 years ago
- ☆19Updated 2 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 2 months ago
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Updated 6 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 9 months ago
- model-based understanding of single-cell CRISPR screening☆23Updated 6 months ago
- ☆18Updated 3 years ago
- ☆24Updated last year
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- ☆27Updated 2 years ago
- ☆22Updated 8 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Scripts + resources for analyzing combinatorial Hi-C data☆30Updated 5 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆35Updated 2 years ago
- ☆16Updated 2 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆15Updated 4 years ago
- Fast motif matching in R☆47Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network☆14Updated last month
- Scripts for processing sci-RNA-seq/sci-ATAC-seq/sci-CAR reads processing☆15Updated 6 years ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆13Updated 4 months ago
- ☆31Updated 5 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆92Updated 11 months ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 2 years ago