liwenran / DeepTACTLinks
DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning
☆20Updated 4 years ago
Alternatives and similar repositories for DeepTACT
Users that are interested in DeepTACT are comparing it to the libraries listed below
Sorting:
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- ☆34Updated 2 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- ☆19Updated 2 years ago
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Updated 6 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 4 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated last month
- ☆17Updated 7 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 8 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ☆17Updated 6 years ago
- ☆16Updated 2 years ago
- ☆27Updated 2 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆16Updated last week
- ☆37Updated 2 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Updated 2 years ago
- Relative Expression Ordering Analysis (REOA) package☆20Updated 2 years ago
- Scripts for processing sci-RNA-seq/sci-ATAC-seq/sci-CAR reads processing☆15Updated 6 years ago
- ☆12Updated 4 years ago
- Scripts + resources for analyzing combinatorial Hi-C data☆30Updated 5 years ago
- ☆20Updated 3 months ago
- ☆22Updated 8 years ago
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆21Updated last year
- ☆30Updated 2 years ago
- ☆11Updated 5 years ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆27Updated 7 years ago
- ☆18Updated 3 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 4 months ago
- ☆31Updated 5 years ago