liwenran / DeepTACTLinks
DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning
☆20Updated 5 years ago
Alternatives and similar repositories for DeepTACT
Users that are interested in DeepTACT are comparing it to the libraries listed below
Sorting:
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- ☆36Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆92Updated last month
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 2 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year
- ☆18Updated 3 years ago
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Updated 7 years ago
- ☆18Updated last year
- Single-cell ATAC-seq analysis via Latent feature Extraction☆103Updated 2 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆94Updated last year
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- ☆22Updated 8 years ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Updated 7 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 3 weeks ago
- flexible CDR based distance metrics☆69Updated last month
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆38Updated 4 years ago
- ☆69Updated 3 weeks ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- ☆24Updated 3 months ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Updated 2 years ago
- A suite of tools for evolutionary and functional analysis of microRNA binding sites http://www.targetscan.org☆45Updated 7 years ago
- model-based understanding of single-cell CRISPR screening☆26Updated last year
- epiTCR: a highly sensitive predictor for TCR–peptide binding☆13Updated 3 months ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆20Updated 4 months ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆51Updated 10 months ago