liwenran / DeepTACTLinks
DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning
☆20Updated 5 years ago
Alternatives and similar repositories for DeepTACT
Users that are interested in DeepTACT are comparing it to the libraries listed below
Sorting:
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- ☆36Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆92Updated 3 weeks ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆94Updated last year
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated last month
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Updated 7 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year
- Single-cell ATAC-seq analysis via Latent feature Extraction☆103Updated 2 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- ☆22Updated 8 years ago
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Updated 7 years ago
- ☆18Updated 3 years ago
- ☆69Updated this week
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆81Updated last year
- Scripts + resources for analyzing combinatorial Hi-C data☆31Updated 6 years ago
- ☆18Updated last year
- ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network☆16Updated last month
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated last week
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆71Updated 2 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Updated 4 years ago
- ☆44Updated last year
- A suite of tools for evolutionary and functional analysis of microRNA binding sites http://www.targetscan.org☆45Updated 7 years ago
- ☆18Updated 3 years ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- flexible CDR based distance metrics☆68Updated last week