Detection of phage RBPs based on protein domains and machine learning
☆36Feb 5, 2025Updated last year
Alternatives and similar repositories for PhageRBPdetection
Users that are interested in PhageRBPdetection are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pairwise machine learning models for phage-host interaction prediction☆23Jun 23, 2024Updated 2 years ago
- Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"☆13Nov 2, 2023Updated 3 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆62Jun 4, 2025Updated last year
- RBPseg: A Tool for Tail Fiber Structure Prediction☆16Jan 27, 2026Updated 9 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Sep 30, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A fine-tuned ESM-2 model to accurately detect phage depolymerases in their genomes.☆15Feb 5, 2025Updated last year
- Quickly get the taxonomy of a genome☆10Oct 3, 2023Updated 3 years ago
- ☆20Nov 17, 2022Updated 3 years ago
- Phage Annotation using Protein Structures☆180Updated this week
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆42Apr 20, 2026Updated 6 months ago
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆239Oct 21, 2026Updated 2 weeks ago
- multiPhATE with comparative genomics☆18Jun 26, 2026Updated 4 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆83Apr 16, 2025Updated last year
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 5 years ago
- Python package for phage-host interaction prediction☆31Aug 31, 2026Updated 2 months ago
- A deep learning method for the prediction of phage-bacteria interactions based on key genes☆10Dec 16, 2024Updated last year
- Tool for recognizing genetic codes (incl. multiple genetic codes in phage genomes) and genetic-code-informed annotation of coding regions…☆11Sep 9, 2023Updated 3 years ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Jul 12, 2022Updated 4 years ago
- Git repository containing the code and genomics data published in the article "Predicting phage-bacteria interactions at the strain level…☆13Jan 22, 2026Updated 9 months ago
- Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification☆15Sep 27, 2023Updated 3 years ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 11 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Sep 7, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Learn Julia in one workday!☆13Jan 7, 2020Updated 6 years ago
- ☆16May 26, 2022Updated 4 years ago
- ☆32Updated this week
- PHANOTATE: a gene caller for phages.☆95Dec 2, 2024Updated last year
- ☆37Dec 6, 2023Updated 2 years ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 4 months ago
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 5 years ago
- Phage-Host Interaction Search Tool☆33Sep 10, 2026Updated last month
- ☆34Dec 20, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- De novo VIral Genome Annotator☆26Jan 11, 2026Updated 9 months ago
- ☆25Sep 26, 2025Updated last year
- Systematic search of all known anti-phage systems.☆188Sep 1, 2026Updated 2 months ago
- Host prediction for phages☆29Nov 6, 2024Updated 2 years ago
- Python package to run DefensePredictor, a machine learning model to identify proteins involved in anti-phage defense☆60Apr 27, 2026Updated 6 months ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆12Jan 8, 2021Updated 5 years ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆17Sep 25, 2024Updated 2 years ago