sid-krish / rhometaLinks
metagenome population recombination rate estimation pipeline
β12Updated 2 weeks ago
Alternatives and similar repositories for rhometa
Users that are interested in rhometa are comparing it to the libraries listed below
Sorting:
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomesβ15Updated 7 years ago
- Mandrake πΏ/π¨βπ¬π¦ β Fast visualisation of the population structure of pathogens using Stochastic Cluster Embeddingβ38Updated 7 months ago
- Computation of average nucleotide identity with the use of MMseqs2β15Updated 10 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenomeβ33Updated last month
- Genome size estimation from long read overlapsβ62Updated last month
- MetagenOmic read Re-Assigner and abundance quantifierβ18Updated 9 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious originβ14Updated last year
- software to identify primers that can distinguish genomesβ20Updated 9 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphsβ24Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancyβ15Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.β55Updated 6 months ago
- Assembly based core genome SNP alignments for bacteriaβ25Updated 6 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/biβ¦β17Updated 2 years ago
- Prediction of microbial interactions in complex communitiesβ11Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.β27Updated 2 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomesβ13Updated last year
- Code to create a PRG from a Multiple Sequence Alignment fileβ25Updated last month
- Neptune: Genomic Signature Discoveryβ20Updated 11 months ago
- tool to determine optimal refrerence genome given a set of fasta filesβ15Updated 2 years ago
- Resolving Species Level Classification Using Emuβ14Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.β13Updated 3 years ago
- Fast viral consensus genome reconstructionβ25Updated 3 months ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome sizeβ12Updated last month
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignmentβ16Updated 6 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and meβ¦β22Updated 2 years ago
- Finding regions of similarity between plasmidsβ16Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ29Updated 2 years ago
- Detect contigs of complete circular genomesβ23Updated 6 years ago
- Sketch phylogenetic trees and networksβ23Updated 2 months ago
- Differential k-mer analysisβ37Updated last year