sid-krish / rhometaLinks
metagenome population recombination rate estimation pipeline
☆12Updated 3 weeks ago
Alternatives and similar repositories for rhometa
Users that are interested in rhometa are comparing it to the libraries listed below
Sorting:
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 8 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 4 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 2 weeks ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆10Updated 3 years ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 weeks ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆13Updated 5 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- software to identify primers that can distinguish genomes☆21Updated 4 months ago
- Quickly get coverage statistics given reads and an assembly☆13Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 weeks ago
- ☆20Updated last year
- De novo VIral Genome Annotator☆21Updated 8 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Prediction of microbial interactions in complex communities☆12Updated 9 months ago
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆10Updated last month
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Resolving Species Level Classification Using Emu☆12Updated 11 months ago
- Assort phage protein sequences into phamilies using MMseqs2☆10Updated 5 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆11Updated 3 months ago
- Visualize microbial evolution at the SNP level!☆14Updated 3 weeks ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago