Python package to run DefensePredictor, a model that identifies proteins involved in anti-phage defense
☆17Dec 17, 2025Updated 3 months ago
Alternatives and similar repositories for defense_predictor
Users that are interested in defense_predictor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Systematic search of all known anti-phage systems.☆149Jan 22, 2026Updated 2 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆25Feb 7, 2025Updated last year
- Detection of phage RBPs based on protein domains and machine learning☆30Feb 5, 2025Updated last year
- Mining CRISPRs in Environmental Datasets☆122Feb 10, 2023Updated 3 years ago
- Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.☆19Feb 2, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- geNomad: Identification of mobile genetic elements☆297Mar 18, 2026Updated last week
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- Virus Protein Structural Analysis Toolkit☆13Sep 9, 2024Updated last year
- Code of a structure-enhanced RNA language model named ERNIE-RNA☆41Nov 19, 2025Updated 4 months ago
- This tool designs guides for use with the base editor technology.☆12Aug 11, 2023Updated 2 years ago
- Heroku/Dash app for inDelphi.☆11Dec 8, 2022Updated 3 years ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 4 years ago
- 🤝 Tool for mining KEGG pathways completeness data from eggNOG-mapper annotations☆32Mar 6, 2026Updated 3 weeks ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Deep conditional autoregressive models for genome editing sequence-to-sequence problems☆10Jun 29, 2021Updated 4 years ago
- ☆11Dec 9, 2025Updated 3 months ago
- Code and examples for optical pooled screens (updated protocol).☆14Jan 28, 2024Updated 2 years ago
- ☆17May 13, 2025Updated 10 months ago
- ☆16Jan 19, 2026Updated 2 months ago
- Dual-core Multi-agent Learning Framework For EC Number Prediction☆21Nov 5, 2024Updated last year
- Locate antiviral defence systems in prokaryotic genomes☆70Oct 22, 2024Updated last year
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 3 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Complete saturation mutagenesis of a protein using ESM☆16Feb 20, 2024Updated 2 years ago
- Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…☆19Nov 22, 2022Updated 3 years ago
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- ☆75Oct 19, 2024Updated last year
- A newly developed metabolic modeling pipeline, SuperCC, which could simulate the performances of different microbiomes.☆26Nov 21, 2025Updated 4 months ago
- Domain-PFP is a self-supervised method to predict protein functions from the domains☆13Nov 1, 2023Updated 2 years ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆49Nov 4, 2025Updated 4 months ago
- A method to predict DNA shape features considering farther flanking region.☆39Sep 25, 2024Updated last year
- ☆20Sep 26, 2025Updated 6 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Package to Score Sequences using Rule Set 3☆15Nov 10, 2025Updated 4 months ago
- ☆11Aug 2, 2024Updated last year
- ☆21Sep 1, 2025Updated 6 months ago
- ☆11Mar 11, 2025Updated last year
- TUnA: Transformer-based Uncertainty Aware model for PPI Prediction☆17Dec 21, 2025Updated 3 months ago
- ☆49Sep 25, 2024Updated last year
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆11Dec 10, 2023Updated 2 years ago