dimiboeckaerts / PhageHostLearnLinks
Pairwise machine learning models for phage-host interaction prediction
☆17Updated last year
Alternatives and similar repositories for PhageHostLearn
Users that are interested in PhageHostLearn are comparing it to the libraries listed below
Sorting:
- Detection of phage RBPs based on protein domains and machine learning☆25Updated 9 months ago
- Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"☆13Updated 2 years ago
- Software for predicting translation initiation rates in bacteria☆29Updated 3 months ago
- Viral protein family functional prediction using protein language models☆21Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆74Updated 6 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆87Updated 2 months ago
- Python package to run DefensePredictor, a model that identifies proteins involved in anti-phage defense☆14Updated last month
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆77Updated 4 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆58Updated 7 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- ☆12Updated last year
- Machine-learning-based general bacterial promoter prediction tool.☆51Updated 2 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆68Updated last month
- Discovery of conserved gene clusters in multiple genomes☆111Updated 5 months ago
- Learning and Aligning Large Protein Families with support of protein language models.☆28Updated this week
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 8 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆49Updated 10 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆40Updated 2 years ago
- ☆21Updated 2 years ago
- Unified Human Gut Virome Catalog☆37Updated this week
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 6 months ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆26Updated last week
- Predict AMPs in (meta)genomes and peptides☆88Updated 4 months ago
- ☆38Updated last year
- PHANOTATE: a gene caller for phages.☆78Updated 11 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 5 months ago
- Graph convolutional neural network for host prediction☆19Updated 3 months ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆34Updated 7 months ago
- ☆41Updated 4 months ago
- ☆11Updated 7 months ago