Pairwise machine learning models for phage-host interaction prediction
☆22Jun 23, 2024Updated 2 years ago
Alternatives and similar repositories for PhageHostLearn
Users that are interested in PhageHostLearn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"☆13Nov 2, 2023Updated 2 years ago
- Detection of phage RBPs based on protein domains and machine learning☆34Feb 5, 2025Updated last year
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 5 years ago
- Python package for phage-host interaction prediction☆17Aug 31, 2026Updated last week
- ☆20Nov 17, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆17Jul 13, 2025Updated last year
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- RBPseg: A Tool for Tail Fiber Structure Prediction☆16Jan 27, 2026Updated 7 months ago
- multiPhATE with comparative genomics☆18Jun 26, 2026Updated 2 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Jul 12, 2022Updated 4 years ago
- A tool for identifying active prophage elements through read mapping☆14Oct 9, 2023Updated 2 years ago
- Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides …☆14Feb 25, 2025Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Hyperdimensional computing in Julia☆19Jul 29, 2026Updated last month
- Learn Julia in one workday!☆13Jan 7, 2020Updated 6 years ago
- PHANOTATE: a gene caller for phages.☆93Dec 2, 2024Updated last year
- ☆37Dec 6, 2023Updated 2 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 3 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆41Apr 20, 2026Updated 4 months ago
- ☆12Mar 29, 2025Updated last year
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Aug 24, 2026Updated 2 weeks ago
- ☆13Oct 19, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- Points of Significance: Adding realism to the SIR model for infectious disease epidemics☆13Nov 30, 2021Updated 4 years ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 3 months ago
- Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparativ…☆15Sep 22, 2023Updated 2 years ago
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- This is the repository for DeepHost, a phage host prediction tool.☆23Dec 12, 2024Updated last year
- Machine-learning-based general bacterial promoter prediction tool.☆55Jun 19, 2023Updated 3 years ago
- ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes☆34Feb 16, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Identifying Protein-DNA binding sites based on multi-view graph embedding fusion☆12Sep 20, 2024Updated last year
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 8 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆46Mar 24, 2026Updated 5 months ago
- Points of Significance: Modeling infectious epidemics☆12Oct 31, 2024Updated last year
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆83Apr 16, 2025Updated last year