Pairwise machine learning models for phage-host interaction prediction
☆21Jun 23, 2024Updated last year
Alternatives and similar repositories for PhageHostLearn
Users that are interested in PhageHostLearn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"☆13Nov 2, 2023Updated 2 years ago
- Detection of phage RBPs based on protein domains and machine learning☆30Feb 5, 2025Updated last year
- ☆21Nov 17, 2022Updated 3 years ago
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 4 years ago
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆17Jul 13, 2025Updated 8 months ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆38Dec 20, 2024Updated last year
- multiPhATE with comparative genomics☆18Jun 14, 2021Updated 4 years ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆49Jul 12, 2022Updated 3 years ago
- A tool for identifying active prophage elements through read mapping☆13Oct 9, 2023Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆59Jun 4, 2025Updated 9 months ago
- Learn Julia in one workday!☆13Jan 7, 2020Updated 6 years ago
- PHANOTATE: a gene caller for phages.☆85Dec 2, 2024Updated last year
- Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparativ…☆15Sep 22, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆38Dec 6, 2023Updated 2 years ago
- Hyperdimensional computing in Julia☆17Mar 20, 2026Updated last week
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 3 months ago
- ☆10Mar 29, 2025Updated 11 months ago
- Points of Significance: Adding realism to the SIR model for infectious disease epidemics☆13Nov 30, 2021Updated 4 years ago
- ☆20Sep 26, 2025Updated 6 months ago
- ☆13Oct 19, 2023Updated 2 years ago
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Phage Annotation using Protein Structures☆154Feb 9, 2026Updated last month
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆41Feb 26, 2026Updated last month
- Software for predicting translation initiation rates in bacteria☆33Jul 30, 2025Updated 7 months ago
- ☆16Nov 2, 2024Updated last year
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 3 years ago
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- Points of Significance: Modeling infectious epidemics☆12Oct 31, 2024Updated last year
- This is the repository for DeepHost, a phage host prediction tool.☆20Dec 12, 2024Updated last year
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆37Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Machine-learning-based general bacterial promoter prediction tool.☆53Jun 19, 2023Updated 2 years ago
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 8 years ago
- ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes☆34Feb 16, 2024Updated 2 years ago
- Identifying Protein-DNA binding sites based on multi-view graph embedding fusion☆12Sep 20, 2024Updated last year
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆12Jan 8, 2021Updated 5 years ago
- Fast protein backbone flexibility prediction model☆34Jan 4, 2026Updated 2 months ago
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago