Phage virion protein classifier
☆14Nov 6, 2024Updated last year
Alternatives and similar repositories for PhaVIP
Users that are interested in PhaVIP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-Teacher Distillation for Protein embedding☆13May 31, 2024Updated 2 years ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- Host prediction for phages☆29Nov 6, 2024Updated last year
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated last year
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆19Nov 6, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆35Jul 29, 2024Updated 2 years ago
- GCN classifier for phage taxanomy classification☆32Nov 6, 2024Updated last year
- Official Pytorch implementation of TargetNet, Bioinformatics 2022☆14Apr 9, 2022Updated 4 years ago
- vaginal microbiota☆13Jan 21, 2025Updated last year
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 3 years ago
- Model for taxonomy classification☆16May 28, 2021Updated 5 years ago
- ☆15Jun 24, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Virus Identification☆29May 26, 2025Updated last year
- Pairwise machine learning models for phage-host interaction prediction☆23Jun 23, 2024Updated 2 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆13Jul 11, 2026Updated 2 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year
- Prediction of virus-host association using protein language models and multiple instance learning☆23Jun 13, 2024Updated 2 years ago
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 3 years ago
- ☆12Mar 29, 2025Updated last year
- Time Series Classification with Convolutional Neural Network: Automated Trading by Pattern Recognition (Master's Thesis)☆20Jan 19, 2023Updated 3 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆24Sep 5, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆29Aug 3, 2026Updated 2 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆77Aug 13, 2026Updated last month
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆83Apr 16, 2025Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆39Feb 26, 2023Updated 3 years ago
- ViOTUcluster: A high-speed, all-in-one solution that streamlines the entire virome analysis workflow☆26Sep 27, 2026Updated last week
- SGQuant: Squeezing the Last Bit on Graph Neural Networks with Specialized Quantization☆11Aug 12, 2020Updated 6 years ago
- ☆22Mar 6, 2024Updated 2 years ago
- A whole-genome and alignment-free prokaryotic phylogeny tool☆23May 26, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆35Aug 16, 2022Updated 4 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆13May 27, 2025Updated last year
- Detection of phage RBPs based on protein domains and machine learning☆34Feb 5, 2025Updated last year
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆18May 27, 2024Updated 2 years ago
- ☆38Apr 15, 2024Updated 2 years ago