KennthShang / PhaVIPLinks
Phage virion protein classifier
☆12Updated 7 months ago
Alternatives and similar repositories for PhaVIP
Users that are interested in PhaVIP are comparing it to the libraries listed below
Sorting:
- ☆11Updated 3 months ago
- Graph convolutional neural network for host prediction☆19Updated 2 years ago
- GCN classifier for phage taxanomy classification☆31Updated 7 months ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆13Updated 7 months ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- ☆21Updated 3 years ago
- Host prediction for phages☆25Updated 7 months ago
- ☆10Updated 2 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆16Updated 2 months ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆19Updated 3 weeks ago
- Viral protein family functional prediction using protein language models☆19Updated last year
- Virus Identification☆22Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- ☆32Updated 4 months ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Updated 7 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆25Updated 2 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- ☆17Updated 3 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 months ago
- ☆18Updated 4 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 10 months ago
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆14Updated 2 years ago
- Detection of phage RBPs based on protein domains and machine learning☆23Updated 4 months ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 2 years ago
- The viral taxonomic assignment pipeline☆26Updated 3 months ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆11Updated 4 years ago
- Integrative virome pipeline☆13Updated 7 months ago
- ☆32Updated last year
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆14Updated 4 months ago