KennthShang / PhaVIPLinks
Phage virion protein classifier
☆14Updated last year
Alternatives and similar repositories for PhaVIP
Users that are interested in PhaVIP are comparing it to the libraries listed below
Sorting:
- GCN classifier for phage taxanomy classification☆31Updated last year
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆17Updated 5 months ago
- Host prediction for phages☆25Updated last year
- Graph convolutional neural network for host prediction☆18Updated 6 months ago
- Virus Identification☆25Updated 8 months ago
- ☆11Updated 10 months ago
- Biological sequence clustering tool with dynamic threshold☆27Updated 2 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Updated 8 months ago
- Viral protein family functional prediction using protein language models☆21Updated last month
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Updated last year
- Detection of phage RBPs based on protein domains and machine learning☆30Updated last year
- ☆34Updated 4 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Updated 3 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Updated 3 weeks ago
- ☆22Updated 4 years ago
- ☆18Updated 5 years ago
- ☆17Updated 2 years ago
- ☆17Updated 3 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- The viral taxonomic assignment pipeline☆42Updated last month
- ☆43Updated 7 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated 2 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆28Updated 3 weeks ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11Updated 4 years ago
- ☆34Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆15Updated last year