KennthShang / PhaVIPLinks
Phage virion protein classifier
☆14Updated last year
Alternatives and similar repositories for PhaVIP
Users that are interested in PhaVIP are comparing it to the libraries listed below
Sorting:
- Graph convolutional neural network for host prediction☆19Updated 4 months ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Updated last year
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆22Updated 5 months ago
- Virus Identification☆23Updated 5 months ago
- GCN classifier for phage taxanomy classification☆31Updated last year
- ☆11Updated 8 months ago
- Host prediction for phages☆25Updated last year
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- Viral protein family functional prediction using protein language models☆21Updated last year
- ☆21Updated 3 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Updated 2 weeks ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆15Updated last year
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆11Updated 4 years ago
- The viral taxonomic assignment pipeline☆32Updated last month
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆27Updated 6 months ago
- ☆31Updated last month
- Detection of phage RBPs based on protein domains and machine learning☆27Updated 9 months ago
- ☆17Updated 3 years ago
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆16Updated 3 months ago
- ☆16Updated last month
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Updated 10 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 3 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 8 months ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago
- ☆33Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- ☆35Updated 4 months ago
- ☆18Updated 4 years ago