voorloopnul / awesome-phagesLinks
A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
☆49Updated 3 years ago
Alternatives and similar repositories for awesome-phages
Users that are interested in awesome-phages are comparing it to the libraries listed below
Sorting:
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 6 months ago
- whole genome MLST analysis☆47Updated 3 months ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated last week
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- ☆20Updated last year
- ☆37Updated last year
- Prediction of prophages from bacterial genomes☆79Updated 3 months ago
- Gene Absence Presence Identification tool.☆27Updated 5 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆75Updated 2 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- ☆75Updated this week
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- Discover and annotate the virome☆49Updated 3 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last week
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆60Updated 5 months ago
- ☆29Updated 2 years ago
- IslandPath standalone software☆33Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 4 months ago
- Bifrost graph gene caller.☆95Updated 11 months ago