voorloopnul / awesome-phagesLinks
A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
☆49Updated 3 years ago
Alternatives and similar repositories for awesome-phages
Users that are interested in awesome-phages are comparing it to the libraries listed below
Sorting:
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated last week
- whole genome MLST analysis☆48Updated 3 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆76Updated last week
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- A toolkit for prokaryotic comparative genomics☆51Updated last week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last month
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated this week
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- ARG normalization by mapping to the ARO ontology.☆59Updated 2 months ago
- Bacterial GWAS analysis☆43Updated 2 months ago
- ☆20Updated last year
- ☆38Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 5 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Discover and annotate the virome☆53Updated this week
- ☆76Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- Gene Absence Presence Identification tool.☆27Updated 6 months ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Microbiome classification pipeline☆65Updated 4 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆41Updated last week
- Prediction of prophages from bacterial genomes☆81Updated 3 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated 2 years ago
- ☆30Updated 2 years ago
- IslandPath standalone software☆33Updated last year