lhqing / ALLCoolsLinks
Toolkit for single-cell DNA methylation analysis.
☆45Updated 2 weeks ago
Alternatives and similar repositories for ALLCools
Users that are interested in ALLCools are comparing it to the libraries listed below
Sorting:
- ☆69Updated last month
- ☆37Updated last year
- Mapping pipeline for snmC-seq based technologies.☆20Updated 2 years ago
- ☆52Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- ☆48Updated this week
- A method for analyzing scATAC-seq experiments.☆34Updated 6 months ago
- ☆59Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- A python package for chromVAR☆32Updated 2 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Updated 2 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated 8 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Molecular interactions inference from single-cell multi-omics data☆30Updated 2 months ago
- ☆37Updated 9 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 3 weeks ago
- ☆32Updated 11 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated last year
- ☆26Updated 8 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Clustering motif models to remove redundancy☆43Updated 2 years ago
- ☆32Updated 3 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 3 years ago
- ☆18Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 weeks ago