lhqing / ALLCoolsLinks
Toolkit for single-cell DNA methylation analysis.
☆41Updated 3 weeks ago
Alternatives and similar repositories for ALLCools
Users that are interested in ALLCools are comparing it to the libraries listed below
Sorting:
- ☆66Updated 3 weeks ago
- Mapping pipeline for snmC-seq based technologies.☆20Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated last year
- High-definition modeling of chromatin + transcriptomics data☆24Updated 2 months ago
- A method for analyzing scATAC-seq experiments.☆31Updated 3 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆17Updated 3 years ago
- Information-based dimensionality reduction☆29Updated 6 months ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- ☆43Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ☆35Updated 9 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- ☆49Updated 10 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- ☆35Updated 3 months ago
- ☆59Updated 9 months ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated last month
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- ☆44Updated last week
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- ☆17Updated last year
- ☆34Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆50Updated 4 years ago
- Single-cell copy number calling and event history reconstruction.☆25Updated 6 months ago
- ☆30Updated 2 years ago