mortazavilab / swan_vis
A Python library to visualize and analyze long-read transcriptomes
☆57Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for swan_vis
- SingleCell Nanopore sequencing data analysis☆52Updated 3 weeks ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆56Updated last month
- ENCODE long read RNA-seq pipeline☆44Updated last year
- Tutorial Website☆53Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated last month
- Long-read Isoform Quantification and Analysis☆39Updated 3 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆28Updated 11 months ago
- IDR☆30Updated last year
- Quantification of transposable element expression using RNA-seq☆64Updated 9 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 3 weeks ago
- ☆58Updated 3 months ago
- Software for Quantifying Interspersed Repeat Expression☆49Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆75Updated 3 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- Updated DANPOS2 to work with python3☆20Updated 8 months ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆35Updated 7 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆41Updated last month
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆30Updated 6 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆37Updated last month
- Publication quality NGS track plotting☆107Updated 2 years ago
- BigWig and BAM utilities☆92Updated 7 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago