mortazavilab / swan_visLinks
A Python library to visualize and analyze long-read transcriptomes
☆62Updated last month
Alternatives and similar repositories for swan_vis
Users that are interested in swan_vis are comparing it to the libraries listed below
Sorting:
- SingleCell Nanopore sequencing data analysis☆60Updated this week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆12Updated 2 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 7 months ago
- A program for the analysis of single cell nanopore long read data☆19Updated 2 months ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆20Updated 3 months ago
- ☆29Updated 10 months ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆91Updated 2 weeks ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 3 months ago
- IDR☆31Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- BigWig and BAM utilities☆96Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆35Updated 2 weeks ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Publication quality NGS track plotting☆113Updated 2 years ago
- Allele-specific alignment sorting☆56Updated 2 years ago
- ☆61Updated 10 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 4 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 6 months ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated 4 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago