gagneurlab / dropLinks
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
☆157Updated 3 weeks ago
Alternatives and similar repositories for drop
Users that are interested in drop are comparing it to the libraries listed below
Sorting:
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆175Updated this week
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- Software program for checking sample matching for NGS data☆136Updated last year
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆156Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated last week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 6 months ago
- Fast alignment and preprocessing of chromatin profiles☆207Updated 2 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 2 years ago
- ☆155Updated 6 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆145Updated 3 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆133Updated last year
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- Publication quality NGS track plotting☆116Updated last month
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆175Updated last year
- A (mostly) universal methylation extractor for BS-seq experiments.☆174Updated last year
- ☆156Updated 3 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆112Updated last year
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆85Updated last week
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 3 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆156Updated last year
- A small-RNA sequencing analysis pipeline☆98Updated this week
- Copy number calling and variant classification using targeted short read sequencing☆140Updated 3 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆118Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆173Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆192Updated last year
- Detecting sites of genomic enrichment☆197Updated 2 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago