gagneurlab / dropLinks
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
☆149Updated last week
Alternatives and similar repositories for drop
Users that are interested in drop are comparing it to the libraries listed below
Sorting:
- Software program for checking sample matching for NGS data☆134Updated last year
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆108Updated 5 years ago
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆115Updated 5 months ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆149Updated 10 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆102Updated last month
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆129Updated 2 weeks ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆163Updated last month
- Microsatellite instability (MSI) detection for tumor only data.☆107Updated last year
- RNA-Seq analysis workflow☆104Updated 4 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆147Updated last year
- Publication quality NGS track plotting☆114Updated 3 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆162Updated 10 months ago
- A small-RNA sequencing analysis pipeline☆87Updated last month
- Learning the Variant Call Format☆140Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆130Updated 10 months ago
- ASCAT R package☆184Updated 3 months ago
- Copy number calling and variant classification using targeted short read sequencing☆136Updated 2 months ago
- A structural variation pipeline for short-read sequencing☆189Updated this week
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆79Updated last week
- Discovering known and novel miRNAs from small RNA sequencing data☆151Updated 10 months ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆92Updated last month
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated 8 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆138Updated 10 months ago