Alternatives and similar repositories for GenomicRanges

Users that are interested in GenomicRanges are comparing it to the libraries listed below

• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 10 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated last month
• COMBINE-lab / pyroe
  ☆16Updated 6 months ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆22Updated 3 years ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆52Updated this week
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 2 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated last month
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 6 months ago
• TheJacksonLaboratory / pyBedGraph
  A Python package for fast operations on 1-dimensional genomic signal tracks
  ☆24Updated 5 years ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆63Updated last month
• koesterlab / microphaser
  ☆12Updated last year
• Novartis / pisces
  PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …
  ☆30Updated 3 weeks ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last month
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆17Updated 3 years ago
• InscriptaLabs / BioCantor
  ☆22Updated last year
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆39Updated 2 years ago
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated 2 months ago
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 4 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated 3 weeks ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• nf-core / nascent
  Nascent Transcription Processing Pipeline
  ☆19Updated last week
• ExpressionAnalysis / HLAProfiler
  Using k-mers to call HLA alleles in RNA sequencing data
  ☆22Updated 6 years ago
• databio / pararead
  Simplifies parallel processing of DNA sequencing reads
  ☆9Updated 9 months ago
• VanLoo-lab / gritic
  A tool for timing complex copy number gains in cancer.
  ☆17Updated 3 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• databio / GenomicDistributions
  Calculate and plot distributions of genomic ranges
  ☆26Updated 2 months ago
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 3 years ago
• brianyiktaktsui / Skymap
  High-throughput gene to knowledge mapping through massive integration of public sequencing data.
  ☆31Updated 6 years ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆37Updated last year