Alternatives and similar repositories for GenomicRanges

Users that are interested in GenomicRanges are comparing it to the libraries listed below

• pyranges / ruranges
  Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library
  ☆30Updated last month
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆55Updated 6 months ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆53Updated last year
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆42Updated 3 months ago
• koesterlab / microphaser
  ☆11Updated 2 years ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆54Updated 2 weeks ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆21Updated 4 years ago
• COMBINE-lab / pyroe
  ☆16Updated last year
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆34Updated 8 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated this week
• TheJacksonLaboratory / pyBedGraph
  A Python package for fast operations on 1-dimensional genomic signal tracks
  ☆23Updated 5 years ago
• nf-core / tumourevo
  Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …
  ☆20Updated 2 weeks ago
• pepkit / peppy
  Project metadata manager for PEPs in Python
  ☆38Updated last month
• nf-core / nascent
  Nascent Transcription Processing Pipeline
  ☆21Updated 2 months ago
• databio / GenomicDistributions
  Calculate and plot distributions of genomic ranges
  ☆27Updated 9 months ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆40Updated 2 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 8 months ago
• InscriptaLabs / BioCantor
  ☆22Updated 2 years ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆31Updated this week
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆31Updated 4 months ago
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆42Updated last week
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆28Updated 2 years ago
• Novartis / pisces
  PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …
  ☆30Updated 7 months ago
• VanLoo-lab / gritic
  A tool for timing complex copy number gains in cancer.
  ☆19Updated 2 months ago
• ExpressionAnalysis / HLAProfiler
  Using k-mers to call HLA alleles in RNA sequencing data
  ☆23Updated 7 years ago
• brianyiktaktsui / Skymap
  High-throughput gene to knowledge mapping through massive integration of public sequencing data.
  ☆31Updated 6 years ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆16Updated 2 years ago