BiocPy / GenomicRangesLinks
Container class to represent genomic locations and support genomic analysis
☆27Updated last week
Alternatives and similar repositories for GenomicRanges
Users that are interested in GenomicRanges are comparing it to the libraries listed below
Sorting:
- bedtools-like functionality for interval sets in rust☆55Updated 4 months ago
- a minimal, scriptable genome browser for python☆52Updated 11 months ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Updated 5 years ago
- Bam to Pandas DataFrame, quickly☆13Updated 7 months ago
- ☆11Updated 2 years ago
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆21Updated last month
- Builds a PEP from SRA or GEO accessions☆54Updated last week
- Feature-rich Python implementation of the tximport package for gene count estimation.☆39Updated last month
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- Project metadata manager for PEPs in Python☆38Updated 3 weeks ago
- ☆16Updated 11 months ago
- Nascent Transcription Processing Pipeline☆20Updated 3 weeks ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 6 months ago
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Updated 5 months ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- A Rust library and command line tool for working with genomic ranges and their data.☆100Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆41Updated this week
- Fast sequencing data quality metrics☆31Updated 3 months ago
- ☆22Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Calculate and plot distributions of genomic ranges☆27Updated 7 months ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated 4 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 5 months ago