BiocPy / GenomicRangesLinks
Container class to represent genomic locations and support genomic analysis
☆22Updated this week
Alternatives and similar repositories for GenomicRanges
Users that are interested in GenomicRanges are comparing it to the libraries listed below
Sorting:
- bedtools-like functionality for interval sets in rust☆52Updated 10 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 weeks ago
- ☆16Updated 5 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated 3 weeks ago
- Bam to Pandas DataFrame, quickly☆13Updated last month
- Bedfile perturbation tool☆17Updated last year
- A Python package for fast operations on 1-dimensional genomic signal tracks☆24Updated 5 years ago
- Simplifies parallel processing of DNA sequencing reads☆9Updated 8 months ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated last week
- Create QC and summary reports for Alevin output☆32Updated 2 months ago
- ☆12Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 9 months ago
- Builds a PEP from SRA or GEO accessions☆50Updated 9 months ago
- ☆22Updated last year
- a minimal, scriptable genome browser for python☆51Updated 6 months ago
- Nascent Transcription Processing Pipeline☆19Updated 3 weeks ago
- Rust wrapper for the next generation (still currently in C++)☆26Updated 3 weeks ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 months ago
- ☆28Updated 6 months ago
- ☆39Updated 9 months ago
- Fast FASTQ sample demultiplexing in Rust.☆62Updated last month
- Blazing fast toolkit to work with .hic and .cool files☆31Updated this week
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆21Updated 3 weeks ago
- Fast sequencing data quality metrics☆26Updated 3 weeks ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated 2 years ago
- Structural variant pipeline☆17Updated 5 years ago
- Calculate and plot distributions of genomic ranges☆26Updated 2 months ago
- Location of public benchmarking; primarily final results☆18Updated 4 months ago