fulcrumgenomics / fgpyo
Quality of life improvements for Bioinformatics in Python.
☆27Updated last week
Related projects ⓘ
Alternatives and complementary repositories for fgpyo
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- Automated Detection and Qualification of Differential Methylation☆11Updated last year
- Complex structural variant visualization for HiFi sequencing data☆26Updated this week
- POSTRE: Prediction Of STRuctural variant Effects☆21Updated 2 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆29Updated last year
- Structural variant (SV) analysis tools☆36Updated 4 months ago
- Fast FASTQ sample demultiplexing in Rust.☆57Updated 3 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Sample Contamination Estimate from VCF☆19Updated 2 weeks ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆16Updated last month
- vembrane filters VCF records using python expressions☆57Updated last month
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated last week
- Population-wide Deletion Calling☆35Updated 2 months ago
- Fast sequencing data quality metrics☆17Updated this week
- v2.x of the microassembly based somatic variant caller☆14Updated 2 months ago
- Structural Variant Prediction Viewer☆31Updated 7 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last month
- bedtools-like functionality for interval sets in rust☆44Updated 3 months ago
- ☆20Updated 7 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆28Updated this week
- Master of Pores 2☆23Updated last year
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆54Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Find Unique genomic Regions☆29Updated this week
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆27Updated last month
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year