Alternatives and similar repositories for fgpyo:

Users that are interested in fgpyo are comparing it to the libraries listed below

• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated last month
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated last month
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆25Updated this week
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated last year
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆61Updated last week
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated last week
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆21Updated last month
• PacificBiosciences / HiFi-SVTopo
  Complex structural variant visualization for HiFi sequencing data
  ☆26Updated this week
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 2 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 6 months ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆35Updated 8 months ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆32Updated last year
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆12Updated last year
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆33Updated 7 months ago
• PacificBiosciences / pbfusion
  ☆20Updated 3 months ago
• Zilong-Li / vcfpp
  a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
  ☆22Updated last week
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated last week
• Psy-Fer / blue-crab
  crab go snap snap
  ☆37Updated last month
• UCSC-nanopore-cgl / margin
  ☆30Updated 2 years ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 3 months ago
• Gabaldonlab / jloh
  A tool to extract LOH blocks from VCF, BAM and FASTA data
  ☆21Updated 6 months ago
• BonsonW / slow5curl
  A library and tool for accessing remote BLOW5 files.
  ☆24Updated 5 months ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆43Updated 2 years ago
• jkbonfield / crumble
  Exploration of controlled loss of quality values for compressing CRAM files
  ☆34Updated 2 years ago
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆20Updated this week
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 5 months ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆46Updated 2 weeks ago