fulcrumgenomics / fgpyoLinks
Quality of life improvements for Bioinformatics in Python.
☆30Updated last week
Alternatives and similar repositories for fgpyo
Users that are interested in fgpyo are comparing it to the libraries listed below
Sorting:
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 3 months ago
- Fast sequencing data quality metrics☆28Updated last week
- Location of public benchmarking; primarily final results☆18Updated 7 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- ☆16Updated 8 months ago
- ☆13Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 5 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- Structural variant (SV) analysis tools☆36Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Sample Contamination Estimate from VCF☆21Updated 10 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆32Updated 4 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 2 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 6 months ago
- A library and tool for accessing remote BLOW5 files.☆24Updated 11 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 9 months ago
- vembrane filters VCF records using python expressions☆62Updated last week
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- ☆33Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆24Updated last year
- v2.x of the microassembly based somatic variant caller☆23Updated 2 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated 2 weeks ago