hyochoi / SCISSOR
Shape Changes In Selecting Sample Outliers in RNA-seq
☆11Updated 2 years ago
Alternatives and similar repositories for SCISSOR:
Users that are interested in SCISSOR are comparing it to the libraries listed below
- Snakemake pipeline for microexon discovery and quantification☆20Updated 2 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated last year
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆13Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Single-cell RNA Processing Software☆11Updated 5 months ago
- Benchmarking long-read RNA-seq analysis tools☆26Updated last month
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆37Updated 2 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 9 months ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 7 months ago
- Pan-transcriptomic phenotyping☆15Updated 3 weeks ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- Bead-based single-cell atac processing☆31Updated 3 years ago
- simplified cellranger for long-read data☆18Updated 6 months ago
- ☆14Updated 2 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 9 months ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆16Updated 3 weeks ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 6 months ago
- Peak caller for CUT&TAG data☆26Updated 2 years ago
- binned motif enrichment analysis and visualisation☆40Updated this week
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆21Updated 4 months ago
- ☆22Updated 2 years ago
- Snakemake pipeline for running MAJIQ☆20Updated last year
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- a tool for summarizing and integrating gene-set analysis results☆16Updated 7 months ago
- ☆28Updated 3 months ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆21Updated 2 years ago
- scover☆23Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- ☆21Updated 4 years ago