Shape Changes In Selecting Sample Outliers in RNA-seq
☆12Jul 3, 2022Updated 4 years ago
Alternatives and similar repositories for SCISSOR
Users that are interested in SCISSOR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated 10 months ago
- Snakemake profile for the (Sun) Grid Engine queueing system☆17Jul 13, 2023Updated 3 years ago
- ☆15Jun 8, 2023Updated 3 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A Los Angeles Times analysis of water usage after the state eased drought restrictions☆12Mar 19, 2021Updated 5 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 7 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- RNA-binding protein motif analysis☆11Sep 29, 2025Updated 9 months ago
- Analyse RNA feature distributions.☆20Dec 16, 2024Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆38Jul 1, 2024Updated 2 years ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 7 months ago
- R function to compute simultaneous sup-t confidence bands following Montiel Olea and Plagborg-Møller (2019)☆11Nov 26, 2023Updated 2 years ago
- Snakemake pipeline for microexon discovery and quantification☆21Jan 16, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A program for the analysis of single cell nanopore long read data☆22Jul 1, 2025Updated last year
- km : a software for RNA-seq investigation using k-mer decomposition☆11Apr 8, 2025Updated last year
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- Network construction Algorithm☆23Sep 5, 2024Updated last year
- Benchmarking long-read RNA-seq analysis tools☆28Feb 17, 2025Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 6 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆68Jul 17, 2026Updated last week
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆25Feb 24, 2025Updated last year
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 7 months ago
- Interactive Protein Sequence VIsualization/Viewer - Interactive Circos☆11Jun 5, 2026Updated last month
- python API to the CoGAPS NMF package☆21Updated this week
- ☆17Jul 29, 2022Updated 3 years ago
- Functional Data Analysis and Utilities for Statistical Computing☆16Jun 19, 2026Updated last month
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13May 1, 2023Updated 3 years ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Dec 13, 2024Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆14Aug 5, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- AIDE: annotation-assisted isoform discovery and quantification from RNA-seq data☆16Aug 6, 2022Updated 3 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- Chromaria is a software platform for artificial life experiments. http://eplex.cs.ucf.edu/chromaria/home.☆12Jun 7, 2021Updated 5 years ago
- BACNET is a Java based platform to develop website for multi-omics analysis☆12Feb 16, 2026Updated 5 months ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆161Jan 23, 2026Updated 6 months ago
- openASO is a project designed to identify regulatory regions of an RNA that can be targeted by antisense oligonucleotides.☆14Sep 30, 2021Updated 4 years ago