☆38Aug 6, 2026Updated last month
Alternatives and similar repositories for rMATS-long
Users that are interested in rMATS-long are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆68Mar 19, 2026Updated 6 months ago
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- ☆55Aug 1, 2024Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆24Dec 10, 2025Updated 9 months ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 4 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 9 months ago
- A universal toolkit for upstream processing of long RNA reads☆239Updated this week
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆57Jun 29, 2023Updated 3 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- ☆310Aug 10, 2026Updated last month
- Technology agnostic long read analysis pipeline for transcriptomes☆162Jan 25, 2024Updated 2 years ago
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆37Nov 6, 2025Updated 10 months ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆23Mar 30, 2024Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated 6 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆308Nov 6, 2025Updated 10 months ago
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 8 months ago
- ☆116Aug 5, 2026Updated last month
- A gene fusion caller for long-read transcriptome sequencing data.☆23Apr 29, 2024Updated 2 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆259Sep 2, 2026Updated 2 weeks ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Sep 4, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package to detect splicing QTLs (sQTLs)☆13Jul 3, 2023Updated 3 years ago
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated 2 years ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆16Sep 7, 2026Updated last week
- The Isoforms from Single-Cell; Long-read Expression Suite☆42Jan 14, 2025Updated last year
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆25Sep 3, 2026Updated 2 weeks ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Jan 21, 2018Updated 8 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆16Apr 4, 2024Updated 2 years ago
- PSI-Sigma☆42Nov 10, 2023Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆71May 30, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆25Feb 28, 2023Updated 3 years ago
- Exploring Isoform-specific interactions☆13Jul 23, 2026Updated last month
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆136Sep 8, 2026Updated last week
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆54Oct 16, 2022Updated 3 years ago
- FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data☆10Jul 20, 2022Updated 4 years ago
- ☆11Sep 17, 2020Updated 6 years ago