script + metadata = standalone component
☆46Sep 3, 2026Updated this week
Alternatives and similar repositories for viash
Users that are interested in viash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆35Updated this week
- ☆14Apr 17, 2025Updated last year
- Visualising data frames as funky heatmaps 📊☆201Dec 12, 2025Updated 8 months ago
- CWL for GDC DNASeq workflows☆24Aug 28, 2026Updated last week
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13Aug 5, 2025Updated last year
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Dec 1, 2025Updated 9 months ago
- Formalizing and benchmarking open problems in single-cell genomics☆56Jun 11, 2025Updated last year
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated last year
- Source code and documentation of a specialized computer assisted synthesis planning (CASP) tool used for the deconstruction of ring syste…☆13May 25, 2020Updated 6 years ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 4 months ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 3 years ago
- Population analysis PIPEline 🛠🧬☆26Mar 2, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- DriverPower☆26Jan 18, 2025Updated last year
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Aug 27, 2026Updated last week
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆16Jul 10, 2026Updated last month
- A taxonomic classifier for shotgun metagenomics reads☆11Aug 26, 2026Updated last week
- ☆12Mar 21, 2026Updated 5 months ago
- ☆15Jul 24, 2026Updated last month
- Python Primer Design Library☆15Mar 27, 2026Updated 5 months ago
- Extracting gene sets from published pathway figures☆15May 23, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆265Updated this week
- A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that c…☆13Oct 19, 2018Updated 7 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- Variant to disease dataset workflows for Open Targets Genetics☆14May 11, 2026Updated 3 months ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆25Jun 19, 2026Updated 2 months ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13May 12, 2022Updated 4 years ago
- ☆17May 22, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Jan 21, 2023Updated 3 years ago
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19May 5, 2019Updated 7 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆20Apr 20, 2025Updated last year
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆47Jul 8, 2026Updated last month
- The Single-Cell Pathology Landscape of Breast Cancer☆28Jan 14, 2020Updated 6 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 7 years ago
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆16Updated this week