viash-io / viashView external linksLinks
script + metadata = standalone component
☆44Feb 6, 2026Updated last week
Alternatives and similar repositories for viash
Users that are interested in viash are comparing it to the libraries listed below
Sorting:
- ☆35Updated this week
- ☆13Apr 17, 2025Updated 9 months ago
- CWL for GDC DNASeq workflows☆23Feb 6, 2026Updated last week
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆28Aug 30, 2025Updated 5 months ago
- DriverPower☆26Jan 18, 2025Updated last year
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆23Jan 30, 2026Updated 2 weeks ago
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19May 5, 2019Updated 6 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated last year
- Multi-modal single cell analysis pipelines☆62Dec 11, 2025Updated 2 months ago
- ☆10Jan 21, 2023Updated 3 years ago
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆14Feb 5, 2026Updated last week
- A Tidy Framework to Hack Gene Expression Signatures☆20Apr 20, 2025Updated 9 months ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Jul 23, 2025Updated 6 months ago
- CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.☆45Mar 6, 2023Updated 2 years ago
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 2 years ago
- ☆11Oct 28, 2025Updated 3 months ago
- Source code and documentation of a specialized computer assisted synthesis planning (CASP) tool used for the deconstruction of ring syste…☆12May 25, 2020Updated 5 years ago
- Variant to disease dataset workflows for Open Targets Genetics☆13Aug 23, 2022Updated 3 years ago
- ☆11Nov 22, 2024Updated last year
- Comparison of single cell normalization strategies☆10Aug 13, 2021Updated 4 years ago
- Read fcs files.☆12Nov 13, 2025Updated 3 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Dec 1, 2025Updated 2 months ago
- VirusScan Pipeline☆12Updated this week
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Oct 6, 2025Updated 4 months ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13May 12, 2022Updated 3 years ago
- DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.☆12May 4, 2022Updated 3 years ago
- A MinION-based pipeline for tracking species biodiversity☆13Feb 19, 2024Updated last year
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated 10 months ago
- A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that c…☆13Oct 19, 2018Updated 7 years ago
- Package to wrangle and visualize genomic data in R☆26Updated this week
- The Single-Cell Pathology Landscape of Breast Cancer☆27Jan 14, 2020Updated 6 years ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Dec 20, 2022Updated 3 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆36Nov 12, 2025Updated 3 months ago
- Python Primer Design Library☆14Nov 24, 2025Updated 2 months ago
- Automatically annotate cell types, consistently across samples.☆18Updated this week
- ☆12Nov 6, 2023Updated 2 years ago
- A collection of scripts for common data management and processing tasks☆10Jan 2, 2024Updated 2 years ago
- ☆11Apr 25, 2024Updated last year
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 3 years ago