viash-io / viash
script + metadata = standalone component
☆40Updated 2 weeks ago
Alternatives and similar repositories for viash
Users that are interested in viash are comparing it to the libraries listed below
Sorting:
- ☆43Updated 6 months ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 5 months ago
- ☆12Updated 3 weeks ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated 11 months ago
- Tools for assessing clustering robustness☆23Updated 2 weeks ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆21Updated last week
- Single-Cell Spatial Explorer☆15Updated last year
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- Multi-omics factor analysis v2☆44Updated 6 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 11 months ago
- ☆43Updated 3 weeks ago
- Code related to scRNA analysis using the scAmpi workflow☆25Updated 6 months ago
- A Python package for gene network analysis☆32Updated 2 years ago
- ☆24Updated 9 months ago
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆20Updated last year
- University of Cambridge PhD thesis☆15Updated 4 years ago
- Individual level Differential Expression Analysis for Single cells☆24Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated last month
- Using BCR and expression for sequence embedding☆21Updated last month
- ☆13Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆19Updated 3 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- ☆30Updated this week
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago