viash-io / viash
script + metadata = standalone component
☆39Updated this week
Related projects ⓘ
Alternatives and complementary repositories for viash
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆21Updated last month
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆23Updated 4 months ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated 11 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- ☆37Updated last month
- bioinformatics plotting and tools☆53Updated 5 months ago
- Single-cell exploratory data analysis for RNA-Seq☆39Updated 3 years ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆22Updated this week
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆26Updated 3 weeks ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆40Updated 2 months ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated last year
- Genomic Features in Python from BioConductor's AnnotationHub☆19Updated this week
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆12Updated 2 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆55Updated 8 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆22Updated 2 years ago
- Summary statistics for repertoires☆16Updated last year
- Single-Cell Spatial Explorer☆14Updated 10 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated last year
- A rust framework to make using alevin-fry even simpler☆46Updated last month
- ☆38Updated last week
- Using BCR and expression for sequence embedding☆19Updated last week
- Multi-modal single cell analysis pipelines☆54Updated this week
- .h5mu files interface for Seurat☆26Updated 11 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆34Updated 2 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 3 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆33Updated last week
- Code and documentation for the curation of cellxgene datasets☆38Updated last week
- Scripts for using scanpy☆31Updated 2 months ago
- Individual level Differential Expression Analysis for Single cells☆22Updated last year