viash-io / viashLinks
script + metadata = standalone component
☆41Updated last month
Alternatives and similar repositories for viash
Users that are interested in viash are comparing it to the libraries listed below
Sorting:
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated 11 months ago
- ☆43Updated 7 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Material for the "Advanced topics in single-cell analysis" course (2022 edition)☆17Updated 3 years ago
- ☆13Updated last month
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 9 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Multi-omics factor analysis v2☆45Updated 7 months ago
- Tools for assessing clustering robustness☆25Updated last week
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Using BCR and expression for sequence embedding☆22Updated last week
- Genomic Features in Python from BioConductor's AnnotationHub☆21Updated last week
- ☆35Updated 3 months ago
- ☆23Updated 4 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last week
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Signac☆25Updated 2 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1101/2025.01.28.635256☆29Updated last month
- Individual level Differential Expression Analysis for Single cells☆24Updated 2 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- Bioinformatics for Benched Biologists☆22Updated 5 years ago
- Multi-omics studies are available here☆51Updated 2 years ago
- ☆24Updated 10 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated last month
- Explore and download data from the recount3 project☆35Updated 3 weeks ago
- ☆25Updated 2 weeks ago