SingleCell Nanopore sequencing data analysis
☆66May 30, 2025Updated 11 months ago
Alternatives and similar repositories for BLAZE
Users that are interested in BLAZE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single cell Nanopore sequencing data for Genotype and Phenotype☆58May 15, 2025Updated 11 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Apr 4, 2024Updated 2 years ago
- ☆22Jul 30, 2025Updated 9 months ago
- ☆31Nov 28, 2024Updated last year
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆18Apr 20, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆108Jan 23, 2026Updated 3 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆66Oct 11, 2024Updated last year
- Full-length transcriptome splicing and mutation analysis☆90Mar 23, 2026Updated last month
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆238Updated this week
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆79Mar 21, 2023Updated 3 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- The Flexible Demultiplexer☆41Mar 30, 2026Updated last month
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- long read RNA-seq quantification☆109Mar 16, 2026Updated last month
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Nov 29, 2022Updated 3 years ago
- LongSom tool for long-reads☆11May 20, 2025Updated 11 months ago
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 2 years ago
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆10May 5, 2020Updated 5 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated 2 months ago
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆165Nov 7, 2024Updated last year
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Mar 20, 2025Updated last year
- cDNA read preprocessing☆92Jul 25, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/☆13Jul 27, 2025Updated 9 months ago
- ☆39Apr 25, 2023Updated 3 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Apr 22, 2026Updated last week
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆60Apr 22, 2026Updated last week
- fork of dorado that supports S/BLOW5☆12Jan 8, 2026Updated 3 months ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆220Updated this week
- SUPPA: Fast quantification of splicing and differential splicing☆298Nov 6, 2025Updated 5 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆66Sep 12, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆22Jan 23, 2026Updated 3 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆262Apr 24, 2026Updated last week
- an API for intersections of genomic data☆149Mar 12, 2026Updated last month
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆272Mar 15, 2026Updated last month
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆44Mar 9, 2023Updated 3 years ago
- Full-Length Alternative Isoform analysis of RNA☆251Apr 21, 2026Updated last week
- ☆14Sep 11, 2023Updated 2 years ago