Alternatives and similar repositories for BLAZE:

Users that are interested in BLAZE are comparing it to the libraries listed below

• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated last week
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆57Updated 3 months ago
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated last year
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆58Updated 10 months ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆37Updated 2 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆46Updated last year
• DavidsonGroup / flexiplex
  The Flexible Demultiplexer
  ☆27Updated last week
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆40Updated 3 months ago
• ucagenomix / sicelore-2.1
  ☆16Updated 2 months ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆55Updated 3 years ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated 3 months ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆36Updated 3 years ago
• Xinglab / espresso
  ☆58Updated 5 months ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆13Updated 9 months ago
• kundajelab / idr
  IDR
  ☆31Updated last year
• xryanglab / xtail
  Genome-wide assessment of differential translations with ribosome profiling data
  ☆19Updated 2 years ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆41Updated last week
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆44Updated 2 years ago
• XiaoTaoWang / NeoLoopFinder
  A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
  ☆59Updated last year
• derijkp / scywalker
  A program for the analysis of single cell nanopore long read data
  ☆15Updated 6 months ago
• mhammell-laboratory / TElocal
  A package for quantifying transposable elements at a locus level for RNAseq datasets.
  ☆24Updated 4 months ago
• LappalainenLab / lorals
  ☆33Updated last year
• dozmorovlab / excluderanges
  Genomic coordinates of problematic genomic regions as GRanges
  ☆32Updated last month
• vivekbhr / Subread_to_DEXSeq
  Scripts to import your FeatureCounts output into DEXSeq
  ☆32Updated 6 years ago
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 4 years ago
• hsinyenwu / RiboPlotR
  RiboPlotR package for Ribo-plot
  ☆14Updated last year
• ENCODE-DCC / wgbs-pipeline
  ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
  ☆29Updated 2 years ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆79Updated 11 months ago
• gaoyubang / nanom6A
  ☆20Updated 2 years ago