shimlab / BLAZE
SingleCell Nanopore sequencing data analysis
☆58Updated 4 months ago
Alternatives and similar repositories for BLAZE:
Users that are interested in BLAZE are comparing it to the libraries listed below
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆11Updated 3 weeks ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 6 months ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- ☆61Updated 9 months ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated this week
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated 3 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated this week
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆45Updated last month
- ☆58Updated 3 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆20Updated 2 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 3 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆35Updated 2 weeks ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆51Updated this week
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 3 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 6 months ago
- The Flexible Demultiplexer☆30Updated last month
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆40Updated this week
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆43Updated 7 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- ☆35Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 4 years ago
- ☆23Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago