nanoporetech / pipeline-pinfish-analysisLinks
Pipeline for annotating genomes using long read transcriptomics data with pinfish
☆28Updated 4 years ago
Alternatives and similar repositories for pipeline-pinfish-analysis
Users that are interested in pipeline-pinfish-analysis are comparing it to the libraries listed below
Sorting:
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- ☆50Updated 3 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 5 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆30Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- python plotly Circos from VCF☆40Updated last year
- ☆32Updated 3 weeks ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- PHAST☆75Updated this week
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- Pore-C support☆53Updated 2 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated this week
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- Toolkit for calling structural variants using short or long reads☆109Updated last month
- Software for clustering de novo assembled transcripts and counting overlapping reads☆74Updated 3 years ago