nanoporetech / pipeline-pinfish-analysisLinks
Pipeline for annotating genomes using long read transcriptomics data with pinfish
☆28Updated 4 years ago
Alternatives and similar repositories for pipeline-pinfish-analysis
Users that are interested in pipeline-pinfish-analysis are comparing it to the libraries listed below
Sorting:
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- ☆39Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 2 months ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆78Updated last year
- Same species annotation lift over pipeline.☆98Updated last year
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- PHAST☆73Updated 3 weeks ago
- A collection of command line tools for working with sequencing data☆51Updated 3 weeks ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- ☆80Updated 4 months ago
- Drosophila transposable element canonical sequences☆28Updated 3 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- python plotly Circos from VCF☆38Updated last year
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- processing 10x genomics reads☆26Updated 5 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ENCODE long read RNA-seq pipeline☆49Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆29Updated 4 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 6 years ago
- ☆48Updated 10 months ago