rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
☆63Jun 3, 2025Updated 9 months ago
Alternatives and similar repositories for rnasplice
Users that are interested in rnasplice are comparing it to the libraries listed below
Sorting:
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 9 months ago
- Nascent Transcription Processing Pipeline☆22Nov 20, 2025Updated 3 months ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆23Jan 15, 2026Updated last month
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Updated this week
- An analysis pipeline for Nanostring nCounter expression data.☆18Jan 30, 2026Updated last month
- Take command of your set enrichment analyses.☆23Updated this week
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆124Feb 5, 2026Updated last month
- Nanopore demultiplexing, QC and alignment pipeline☆219Nov 20, 2025Updated 3 months ago
- Call and score variants from WGS/WES of rare disease patients.☆114Updated this week
- ☆18Apr 18, 2024Updated last year
- A small-RNA sequencing analysis pipeline☆98Jan 7, 2026Updated last month
- Isoform-level functional RNA-Seq analysis 🧬☆36Nov 12, 2025Updated 3 months ago
- A script to make downloading of SRA/GEO data easier☆33Oct 6, 2023Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Jul 13, 2021Updated 4 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆89Feb 27, 2026Updated last week
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- LAVA: Lightweight Assignment of Variant Alleles☆17Dec 27, 2017Updated 8 years ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Nov 20, 2025Updated 3 months ago
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆17Jun 3, 2025Updated 9 months ago
- gatk4 RNA variant calling pipeline☆59Feb 10, 2026Updated 3 weeks ago
- A set of processes/pipelines for bioinformatics☆14Feb 24, 2026Updated last week
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 3 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Dec 3, 2025Updated 3 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Nov 20, 2025Updated 3 months ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Apr 4, 2025Updated 11 months ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 3 years ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆187Feb 8, 2026Updated 3 weeks ago
- Test data for MultiQC.☆24Updated this week
- Compare the quality of multiple genomes, along with their annotations.☆20Jan 15, 2026Updated last month
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- Gencode UTR fix☆16Jan 11, 2023Updated 3 years ago
- Visualization toolkit for differential splicing events☆17Updated this week
- A tutorial on structural variant calling for short read sequencing data☆39Oct 24, 2024Updated last year
- Splice junction analysis and filtering from BAM files☆41Mar 31, 2022Updated 3 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆51Nov 20, 2025Updated 3 months ago
- bioinformatics for peter☆11Apr 8, 2025Updated 10 months ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Mar 9, 2023Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆31Mar 18, 2025Updated 11 months ago