nf-core / rnaspliceLinks
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
☆63Updated 5 months ago
Alternatives and similar repositories for rnasplice
Users that are interested in rnasplice are comparing it to the libraries listed below
Sorting:
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated last month
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆69Updated last week
- The Zavolab Automated RNA-seq Pipeline☆35Updated 3 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 6 months ago
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆77Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- FRASER - Find RAre Splicing Events in RNA-seq☆50Updated 2 weeks ago
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated last week
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated 11 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆81Updated 4 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- ☆33Updated last week
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆78Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 weeks ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆58Updated last month
- ☆33Updated 5 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated last month
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆47Updated 2 years ago
- ☆50Updated 4 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 9 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆84Updated last week
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆119Updated last month
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated 2 weeks ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago