sstadick / bam-builder
Wrapper over rust-htslib for building collections of BAM records for testing.
☆11Updated 11 months ago
Related projects: ⓘ
- ☆22Updated 2 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆16Updated last week
- Iterate over minimizers of a DNA sequence☆24Updated 2 months ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- The python binding for D4 format☆16Updated 2 years ago
- Rust wrapper for the next generation (still currently in C++)☆20Updated last month
- Variant call adjudication☆16Updated 3 months ago
- Generate random test data for bioinformatics☆25Updated 3 months ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 7 months ago
- Rust UMI Directional Adjacency Deduplicator☆14Updated 4 years ago
- Pangenome Graph Variation Format (PGVF)☆18Updated 3 years ago
- A long read simulator based on badread idea☆20Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆27Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated 11 months ago
- convert CHAIN format to PAF format☆13Updated 4 months ago
- ☆13Updated last year
- convert variation graph alignments to coverage maps over nodes☆20Updated 3 months ago
- Remove human reads from a sequencing run☆22Updated this week
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 4 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 5 months ago
- maze: match visualizer☆9Updated 2 years ago
- Shared k-mer content between two genomes☆17Updated last year
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated this week
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆21Updated last month
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆29Updated 4 months ago
- ☆12Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆21Updated 3 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 2 years ago