sstadick / bam-builderLinks
Wrapper over rust-htslib for building collections of BAM records for testing.
☆11Updated last year
Alternatives and similar repositories for bam-builder
Users that are interested in bam-builder are comparing it to the libraries listed below
Sorting:
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated last week
- ☆22Updated 7 months ago
- Generate random test data for bioinformatics☆26Updated last year
- Rust wrapper for the next generation (still currently in C++)☆28Updated this week
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 9 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- The python binding for D4 format☆16Updated 3 years ago
- gia: Genomic Interval Arithmetic☆65Updated 10 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 7 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last month
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 5 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 6 months ago
- A minimap2 implementation with binseq inputs☆14Updated 2 months ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 6 months ago
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆21Updated 5 months ago
- bedtools-like functionality for interval sets in rust☆52Updated 10 months ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Updated 3 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆20Updated 2 weeks ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- sfasta☆35Updated 2 months ago
- A long read simulator based on badread idea☆22Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Rust UMI Directional Adjacency Deduplicator☆15Updated 5 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year