sstadick / bam-builderLinks
Wrapper over rust-htslib for building collections of BAM records for testing.
☆10Updated 2 months ago
Alternatives and similar repositories for bam-builder
Users that are interested in bam-builder are comparing it to the libraries listed below
Sorting:
- ☆21Updated last month
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆24Updated last week
- gia: Genomic Interval Arithmetic☆66Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 8 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- Generate random test data for bioinformatics☆27Updated last year
- bedtools-like functionality for interval sets in rust☆55Updated 6 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 2 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- The python binding for D4 format☆16Updated 4 years ago
- Rust wrapper for the next generation (still currently in C++)☆30Updated last week
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated 3 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Updated last year
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 5 months ago
- A minimap2 implementation with binseq inputs☆17Updated 2 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Command line utility for working with next-generation sequencing files.☆37Updated 7 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- a lexicographically-based GTF/GFF sorter☆38Updated 9 months ago
- Genome browser hub for the T2T genomes and resources☆27Updated 4 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Updated last month
- expressions on VCFs☆91Updated 9 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- convert CHAIN format to PAF format☆15Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- Fast sequencing data quality metrics☆31Updated 5 months ago
- 🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …☆45Updated 5 months ago
- sfasta☆35Updated 9 months ago
- drunk on perbase pileups and lua expressions☆19Updated 2 months ago