sstadick / bam-builderLinks
Wrapper over rust-htslib for building collections of BAM records for testing. 
☆10Updated 2 years ago
Alternatives and similar repositories for bam-builder
Users that are interested in bam-builder are comparing it to the libraries listed below
Sorting:
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated last week
- ☆21Updated 10 months ago
- Generate random test data for bioinformatics☆26Updated last year
- gia: Genomic Interval Arithmetic☆64Updated last year
- The python binding for D4 format☆16Updated 4 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- bedtools-like functionality for interval sets in rust☆54Updated 2 months ago
- Rust wrapper for the next generation (still currently in C++)☆28Updated 3 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 9 months ago
- Command line utility for working with next-generation sequencing files.☆36Updated 4 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- Convert vcf in parquet☆27Updated 9 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 weeks ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 2 months ago
- a lexicographically-based GTF/GFF sorter☆35Updated 6 months ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated 2 weeks ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 3 months ago
- Genome browser hub for the T2T genomes and resources☆23Updated last month
- A minimap2 implementation with binseq inputs☆16Updated 3 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- expressions on VCFs☆86Updated 6 months ago
- an API for intersections of genomic data☆74Updated this week
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- drunk on perbase pileups and lua expressions☆19Updated 5 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago