brentp / alignLinks
sequence alignment. global, local, glocal.
☆42Updated 9 years ago
Alternatives and similar repositories for align
Users that are interested in align are comparing it to the libraries listed below
Sorting:
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 3 years ago
- Efficient handling of FASTQ files from Python☆51Updated 2 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 2 months ago
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Demonstrating best practices for bioinformatics command line tools☆25Updated 5 years ago
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- Annotating principal splice isoforms☆18Updated 2 months ago
- ☆23Updated 6 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated this week
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- ☆26Updated 5 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 8 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- Fast sequencing data quality metrics☆31Updated 4 months ago
- Python bindings to bwa mem☆32Updated 5 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago