EliseCoopman / methylmapLinks
Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.
☆20Updated 4 months ago
Alternatives and similar repositories for methylmap
Users that are interested in methylmap are comparing it to the libraries listed below
Sorting:
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 7 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated 2 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Kmer Analysis of Pileups for Genotyping☆31Updated 3 weeks ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Structural variant (SV) analysis tools☆36Updated last year
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 7 months ago
- ☆21Updated 4 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated last month
- A long-read analysis toolbox for cancer and population genomics☆23Updated 2 weeks ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 4 years ago
- ☆31Updated 11 months ago
- ☆16Updated 6 months ago
- ☆19Updated 3 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- ☆31Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- ☆30Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated 2 years ago
- ☆12Updated 3 years ago
- Tandem repeat genotyping with long reads☆28Updated last month
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 months ago