Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.
☆23Jan 23, 2026Updated 5 months ago
Alternatives and similar repositories for methylmap
Users that are interested in methylmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A program for the analysis of single cell nanopore long read data☆22Jul 1, 2025Updated last year
- ☆22Jan 3, 2025Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Mar 4, 2019Updated 7 years ago
- ☆17Jan 15, 2025Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- ☆17Updated this week
- Tumour-only somatic mutation calling using long reads☆29Oct 28, 2024Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 3 months ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆38Oct 14, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SV genotyping with long reads☆40Jul 3, 2023Updated 3 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated last year
- ☆85Mar 3, 2025Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- ☆36Aug 18, 2024Updated last year
- ☆12Oct 13, 2021Updated 4 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 6 months ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Mar 13, 2026Updated 3 months ago
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆125Oct 9, 2025Updated 8 months ago
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- ☆21Dec 26, 2025Updated 6 months ago
- Methylation Phasing for Nanopore Sequencing☆51Mar 5, 2023Updated 3 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 10 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆164Mar 19, 2026Updated 3 months ago
- Set of tools to manipulate and visualize modified base bam files☆62Aug 2, 2022Updated 3 years ago
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Jun 21, 2022Updated 4 years ago
- ☆30Feb 5, 2021Updated 5 years ago
- ☆33Nov 6, 2022Updated 3 years ago