Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.
☆22Jan 23, 2026Updated 2 months ago
Alternatives and similar repositories for methylmap
Users that are interested in methylmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A program for the analysis of single cell nanopore long read data☆20Jul 1, 2025Updated 8 months ago
- ☆22Jan 3, 2025Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Mar 4, 2019Updated 7 years ago
- ☆16Jan 15, 2025Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated last year
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 10 months ago
- ☆16Mar 2, 2026Updated 3 weeks ago
- Tumour-only somatic mutation calling using long reads☆28Oct 28, 2024Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Apr 28, 2025Updated 10 months ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 10 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆36Oct 14, 2025Updated 5 months ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated last year
- ☆84Mar 3, 2025Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- ☆35Aug 18, 2024Updated last year
- ☆12Oct 13, 2021Updated 4 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆38Dec 30, 2025Updated 2 months ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Mar 13, 2026Updated last week
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆123Oct 9, 2025Updated 5 months ago
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- ☆21Dec 26, 2025Updated 2 months ago
- Methylation Phasing for Nanopore Sequencing☆49Mar 5, 2023Updated 3 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- Set of tools to manipulate and visualize modified base bam files☆59Aug 2, 2022Updated 3 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Jan 29, 2026Updated last month
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆19Jun 21, 2022Updated 3 years ago
- ☆29Feb 5, 2021Updated 5 years ago
- ☆33Nov 6, 2022Updated 3 years ago