PhaTYP: Predicting lifestyle for bacteriophages using BERT
☆19Nov 6, 2024Updated last year
Alternatives and similar repositories for PhaTYP
Users that are interested in PhaTYP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Host prediction for phages☆28Nov 6, 2024Updated last year
- Local version of the virus identification and analysis web server (tool set)☆114May 13, 2026Updated 2 months ago
- ☆35Jun 26, 2025Updated last year
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated last year
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The viral taxonomic assignment pipeline☆45Apr 16, 2026Updated 3 months ago
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- GCN classifier for phage taxanomy classification☆32Nov 6, 2024Updated last year
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- MacSyFinder models allowing for a systematic search of anti-phage systems☆25May 14, 2026Updated 2 months ago
- Multi-Teacher Distillation for Protein embedding☆12May 31, 2024Updated 2 years ago
- ☆34Dec 20, 2023Updated 2 years ago
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 6 months ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆42Aug 9, 2023Updated 2 years ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆27Nov 20, 2023Updated 2 years ago
- Model for taxonomy classification☆16May 28, 2021Updated 5 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- ☆16May 5, 2026Updated 2 months ago
- ☆14Jun 17, 2023Updated 3 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Jun 3, 2026Updated last month
- Virus Identification☆27May 26, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- customizable pipeline to identify viral sequences from (meta)genomic data☆296Nov 28, 2024Updated last year
- Systematic search of all known anti-phage systems.☆178May 5, 2026Updated 2 months ago
- Bioinformatic Application for Quantification and LAbeling of VirAl taxonomy☆17Jul 13, 2026Updated last week
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆32Jul 28, 2018Updated 7 years ago
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated 3 months ago
- ☆18Jul 11, 2026Updated last week
- Statistical analysis of dissolved organic matter based on high-resolution mass spectrometry☆19Jun 28, 2026Updated 3 weeks ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated 2 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Phage Annotation using Protein Structures☆168Updated this week
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆55Oct 12, 2023Updated 2 years ago
- This is the repository for DeepHost, a phage host prediction tool.☆22Dec 12, 2024Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆220Updated this week
- A tool to assemble high-quality phages from metagenomes.☆20May 22, 2026Updated 2 months ago
- Virus Identification By iteRative ANnoTation☆199Apr 15, 2024Updated 2 years ago