PhaTYP: Predicting lifestyle for bacteriophages using BERT
☆20Nov 6, 2024Updated last year
Alternatives and similar repositories for PhaTYP
Users that are interested in PhaTYP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Local version of the virus identification and analysis web server (tool set)☆122Oct 13, 2026Updated 2 weeks ago
- ☆35Jun 26, 2025Updated last year
- ☆10Feb 25, 2026Updated 8 months ago
- The viral taxonomic assignment pipeline☆47Aug 31, 2026Updated 2 months ago
- Host prediction for phages☆29Nov 6, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- CRISPR-Cas systems models for MacSyFinder☆10Dec 5, 2025Updated 10 months ago
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated last year
- MetaCHIP2☆11May 5, 2026Updated 5 months ago
- A tool to assemble high-quality phages from metagenomes.☆28Sep 10, 2026Updated last month
- Accurate identification of bacteriophages from metagenomic data using Transformer☆21Nov 6, 2024Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆44Aug 9, 2023Updated 3 years ago
- Metagenome Clustering and Association Tool.☆29Sep 22, 2026Updated last month
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- MacSyFinder models allowing for a systematic search of anti-phage systems☆27May 14, 2026Updated 5 months ago
- Prophage Activity Estimator☆36May 30, 2024Updated 2 years ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆32Jul 28, 2018Updated 8 years ago
- PlasRAG is a deep learning-based tool specifically designed for analyzing plasmids, which serves two purposes: (1) plasmid property chara…☆10Dec 24, 2025Updated 10 months ago
- Kraken extension to identify viral contigs☆10Dec 4, 2020Updated 5 years ago
- Multi-Teacher Distillation for Protein embedding☆13May 31, 2024Updated 2 years ago
- Virus Identification☆29May 26, 2025Updated last year
- GCN classifier for phage taxanomy classification☆32Nov 6, 2024Updated last year
- Viral protein family functional prediction using protein language models☆24Jan 6, 2026Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- VirBot: a protein-based RNA virus detector for metagenomic data☆35Jul 29, 2024Updated 2 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆301Nov 28, 2024Updated last year
- ☆16Oct 4, 2026Updated 3 weeks ago
- Model for taxonomy classification☆16May 28, 2021Updated 5 years ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆30Nov 20, 2023Updated 2 years ago
- Phage Annotation using Protein Structures☆178Oct 13, 2026Updated 2 weeks ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Bioinformatic Application for Quantification and LAbeling of VirAl taxonomy☆18Updated this week
- Systematic search of all known anti-phage systems.☆188Sep 1, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆14Jun 17, 2023Updated 3 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆26Jan 8, 2026Updated 9 months ago
- Virus Identification By iteRative ANnoTation☆209Apr 15, 2024Updated 2 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆343Updated this week
- Statistical analysis of dissolved organic matter based on high-resolution mass spectrometry☆19Jun 28, 2026Updated 4 months ago
- ☆34Dec 20, 2023Updated 2 years ago
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated 6 months ago