PhaTYP: Predicting lifestyle for bacteriophages using BERT
☆17Nov 6, 2024Updated last year
Alternatives and similar repositories for PhaTYP
Users that are interested in PhaTYP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Host prediction for phages☆27Nov 6, 2024Updated last year
- ☆35Jun 26, 2025Updated 10 months ago
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated 9 months ago
- A simple program to classify the lifestyle of phages.☆17May 22, 2023Updated 2 years ago
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GCN classifier for phage taxanomy classification☆32Nov 6, 2024Updated last year
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- ☆34Dec 20, 2023Updated 2 years ago
- Multi-Teacher Distillation for Protein embedding☆12May 31, 2024Updated last year
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- Local version of the virus identification and analysis web server (tool set)☆107Apr 12, 2026Updated 3 weeks ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆25Feb 7, 2025Updated last year
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆41Aug 9, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Nov 20, 2023Updated 2 years ago
- ☆14Jun 17, 2023Updated 2 years ago
- Model for taxonomy classification☆16May 28, 2021Updated 4 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆38Dec 20, 2024Updated last year
- Virus Identification☆26May 26, 2025Updated 11 months ago
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated 3 weeks ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆31Jul 28, 2018Updated 7 years ago
- ☆17Apr 21, 2026Updated last week
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is the repository for DeepHost, a phage host prediction tool.☆21Dec 12, 2024Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- The viral taxonomic assignment pipeline☆43Apr 16, 2026Updated 2 weeks ago
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆18Feb 3, 2026Updated 3 months ago
- Latest MOCAT2 version☆18Mar 8, 2021Updated 5 years ago
- Systematic search of all known anti-phage systems.☆160Updated this week
- ☆10Mar 29, 2025Updated last year
- ☆38Dec 6, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 3 months ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆37Feb 26, 2023Updated 3 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 5 months ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆81Apr 16, 2025Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆332Apr 20, 2026Updated 2 weeks ago