Virus Protein Structural Analysis Toolkit
☆13Sep 9, 2024Updated last year
Alternatives and similar repositories for vpSAT
Users that are interested in vpSAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes …☆26Dec 5, 2024Updated last year
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 2 years ago
- ☆31Oct 26, 2021Updated 4 years ago
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- ☆28May 26, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆18Dec 23, 2024Updated last year
- Protein representation and design under a single training scheme☆24May 17, 2026Updated 3 weeks ago
- ☆18Jun 1, 2026Updated 2 weeks ago
- DyNoPy☆11Sep 5, 2024Updated last year
- Homomer symmetry prediction from protein sequence☆45Mar 13, 2025Updated last year
- Helper scripts for making phylogenies☆15Jun 7, 2024Updated 2 years ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 5 years ago
- ☆15Sep 29, 2025Updated 8 months ago
- A simple program to classify the lifestyle of phages.☆17May 22, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆35Jun 1, 2026Updated 2 weeks ago
- ☆15Jun 3, 2025Updated last year
- MacSyFinder models allowing for a systematic search of anti-phage systems☆25May 14, 2026Updated last month
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 6 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆132Aug 3, 2025Updated 10 months ago
- Combs repo associated with Lu et al 2024 Science paper☆16Sep 21, 2025Updated 8 months ago
- ☆32Sep 21, 2023Updated 2 years ago
- Decoding the functional networks of non-model organisms☆12May 10, 2026Updated last month
- Multiple Protein Structure Alignment at Scale with FoldMason☆278May 11, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Systematic Multi-Trait AAV Capsid Engineering for Efficient Gene Delivery (Eid et al., Nature Communications, 2024)☆12Aug 26, 2024Updated last year
- ☆21Apr 20, 2026Updated last month
- Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"☆34Apr 18, 2025Updated last year
- ☆19Nov 7, 2024Updated last year
- Assign taxonomic ranks based on evolutionary divergence.☆23Mar 3, 2026Updated 3 months ago
- ☆55Mar 29, 2026Updated 2 months ago
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆19Jan 8, 2025Updated last year
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 5 months ago
- An awesome YAML-based CV that works with your existing Jekyll site☆11Jan 10, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36May 25, 2026Updated 3 weeks ago
- ☆88Sep 20, 2023Updated 2 years ago
- ☆31Oct 7, 2025Updated 8 months ago
- Code for the DiscoTope-3.0 paper and model☆18May 5, 2026Updated last month
- ☆51May 29, 2026Updated 2 weeks ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆37Dec 8, 2025Updated 6 months ago
- Simple Python program to perform codon optimization or heterology calculations.☆12Apr 13, 2021Updated 5 years ago