jnoms / vpSATLinks
Virus Protein Structural Analysis Toolkit
☆14Updated last year
Alternatives and similar repositories for vpSAT
Users that are interested in vpSAT are comparing it to the libraries listed below
Sorting:
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- Fast protein domain structure embedding+search tool☆26Updated 2 months ago
- Graphical Representation of Ancestral Sequence Predictions☆12Updated 2 years ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- DeepECtransformer☆28Updated 2 years ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆22Updated 6 months ago
- Protein Sequence Annotation with Language Models☆24Updated 5 months ago
- Finding patch of conserved amino acid sites in 3D structure☆12Updated 7 months ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated 2 months ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Updated 2 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆31Updated 2 years ago
- Decoding the functional networks of non-model organisms☆11Updated 4 months ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆18Updated last year
- Code for LazyAF pipeline☆21Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes …☆23Updated 11 months ago
- Feature map and function annotation of Proteins☆34Updated last year
- Transmembrane proteins predicted through Language Model embeddings☆41Updated 3 months ago
- ☆21Updated last month
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 2 years ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆55Updated 6 months ago
- Protein structure alignment and search algorithm☆73Updated this week
- Next generation sequence parameter library for proteins☆36Updated 2 months ago
- ☆12Updated 11 months ago
- ☆47Updated last year
- Generation and updating of protein families☆21Updated this week
- Scripts to generate and analyze afdb clusters☆11Updated 2 years ago
- Genomic language model predicts protein co-regulation and function☆84Updated 8 months ago