NeLLi-team / gvclassLinks
☆16Updated last month
Alternatives and similar repositories for gvclass
Users that are interested in gvclass are comparing it to the libraries listed below
Sorting:
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Updated 3 years ago
- MAG Circularization Method☆32Updated 2 weeks ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Discover and annotate the virome☆53Updated last month
- ☆14Updated 4 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆24Updated 9 months ago
- ☆28Updated 9 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 8 months ago
- viralFlye pipeline☆18Updated last year
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated 6 months ago
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated 11 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Phage-Host Interaction Search Tool☆29Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 2 weeks ago
- strain-level analysis tools☆39Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated last year
- Assign taxonomic ranks based on evolutionary divergence.☆23Updated 3 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago