NeLLi-team / gvclassLinks
☆17Updated last week
Alternatives and similar repositories for gvclass
Users that are interested in gvclass are comparing it to the libraries listed below
Sorting:
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- Discover and annotate the virome☆58Updated 3 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 10 months ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Updated 2 years ago
- ☆24Updated 11 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 2 months ago
- viralComplete: BLAST-based viral completeness verification☆24Updated 4 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- MAG Circularization Method☆32Updated 2 months ago
- Unified Human Gut Virome Catalog☆41Updated 2 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- Prophage Activity Estimator☆30Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Updated last month
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆33Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆19Updated 3 years ago
- Assign taxonomic ranks based on evolutionary divergence.☆23Updated 3 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆33Updated 6 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Updated last week