datajoint / element-calcium-imagingLinks
DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT
☆15Updated 7 months ago
Alternatives and similar repositories for element-calcium-imaging
Users that are interested in element-calcium-imaging are comparing it to the libraries listed below
Sorting:
- Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples☆14Updated last month
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆63Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 11 months ago
- ☆52Updated last year
- Calcium imaging inter-session alignment☆15Updated last week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- Deconvolution of calcium imaging data☆102Updated 11 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Browser-based NWB visualization and DANDI exploration☆62Updated last month
- Serial-section automated anatomy extension for ScanImage☆17Updated last month
- Collection of probe description for probeinterface☆17Updated this week
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated 2 years ago
- Histology processing☆71Updated this week
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Registration of cells across sessions.☆75Updated last year
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 3 months ago
- pipeline for volumetric cell segmentation☆13Updated 3 weeks ago
- A package to manage electrophysiology analysis.☆22Updated last week
- Brainways☆22Updated 3 months ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated 3 weeks ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 3 weeks ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Control and design of two-photon photostimulation experiments☆17Updated last year
- pyqt5 dependent applications for IBL sessions☆32Updated 2 months ago
- Collection of tools to handle Neuropixel 1.0 and 2.0 data☆18Updated last week
- This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Ti…☆15Updated 2 years ago