jovo / fast-oopsiLinks
a repository containing everything relevant to our fast non-negative deconvolution work
☆35Updated 8 years ago
Alternatives and similar repositories for fast-oopsi
Users that are interested in fast-oopsi are comparing it to the libraries listed below
Sorting:
- up-to-date code for model-based inference of spike trains from calcium imaging☆24Updated 7 years ago
- Python implementation of fast-oopsi, smc-oopsi, wiener, and discretize with binning☆14Updated 3 years ago
- ☆20Updated 6 years ago
- This repository contains code used for the fly brain activity experiments☆18Updated 2 years ago
- A Python implementation of fast non-negative deconvolution☆23Updated 5 years ago
- Exact Spike Inference Via L0 Optimization☆8Updated 6 years ago
- Recordings of 10k neurons during spontaneous behaviors☆52Updated last year
- Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood☆18Updated 7 years ago
- ☆9Updated 5 years ago
- Dimensionality reduction of spikes trains☆49Updated 3 years ago
- IaC codebase for the NeuroCAAS Platform☆37Updated last year
- Trend Filter Denoising☆21Updated 3 years ago
- Fast Exact Spike Inference Via L0 Optimization☆15Updated 4 years ago
- Some python functions to supplement the NEURON python module☆29Updated 5 years ago
- Preprint classes for biological journals☆30Updated 4 years ago
- CorBinian: A toolbox for modelling and simulating high-dimensional binary and count-data with correlations☆19Updated 3 years ago
- Matlab interface for Latent Factor Analysis via Dynamical Systems (LFADS)☆49Updated 3 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Updated 3 years ago
- A toolbox for inferring spikes from calcium traces.☆23Updated last year
- Code for fitting neural spike trains with nonparametric hidden Markov and semi-Markov models built upon mattjj's PyHSMM framework.☆14Updated 6 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Updated 6 years ago
- a Python machine learning library for neurophysiology data☆36Updated 6 years ago
- Utilities for formatting matplotlib figures☆31Updated 3 months ago
- A Python 3 toolbox for neural receptive field estimation using splines and Gaussian priors.☆25Updated 9 months ago
- course materials for the 2017 Summer Workshop on the Dynamic Brain☆11Updated 7 years ago
- Sparse reduced-rank regression☆20Updated 4 months ago
- YASS: Yet Another Spike Sorter☆66Updated 2 years ago
- benchmarking challenge for finding neurons in imaging data☆73Updated 6 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- ☆27Updated 10 months ago