visual display and analysis python code for retinotopic mapping of rodent visual cortex
☆20Aug 30, 2024Updated last year
Alternatives and similar repositories for retinotopic_mapping
Users that are interested in retinotopic_mapping are comparing it to the libraries listed below
Sorting:
- Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).☆13May 2, 2022Updated 3 years ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆16Mar 7, 2025Updated last year
- waveform classification with recordings from mouse brain using Neuropixels probes☆21Sep 29, 2022Updated 3 years ago
- A mouse brain histology tool for neuroscientists.☆13Feb 16, 2026Updated last month
- Jax implementation of normcorre☆14Jan 25, 2025Updated last year
- ☆12Aug 25, 2021Updated 4 years ago
- Control and design of two-photon photostimulation experiments☆18Jan 1, 2024Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 6 years ago
- Tools to process widefield data☆12Jul 20, 2021Updated 4 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- ☆15Sep 20, 2019Updated 6 years ago
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆34Updated this week
- Registration of cells across sessions.☆76Aug 20, 2024Updated last year
- A Python implementation of the original DI domain caller☆12Aug 2, 2020Updated 5 years ago
- motion correction☆17Jan 27, 2023Updated 3 years ago
- ☆42Aug 6, 2025Updated 7 months ago
- Open Ephys plugins for tracking experiments☆11May 5, 2020Updated 5 years ago
- Brain flatmaps generation☆11Oct 5, 2022Updated 3 years ago
- cell detection in calcium imaging recordings☆438Updated this week
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Aug 18, 2020Updated 5 years ago
- Code for Galgali et al, 2023☆14Jan 11, 2023Updated 3 years ago
- code for the paper, "flexible multitask computation in recurrent networks utilizes shared dynamical motifs"☆10Mar 2, 2025Updated last year
- Sample code for a Zapier engineering blog post☆14Nov 23, 2013Updated 12 years ago
- A Rat fMRI standardized protocol☆14Jul 25, 2024Updated last year
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆14Dec 5, 2025Updated 3 months ago
- VISTASOFT is the main software repository of the VISTA lab at Stanford University.☆154Jan 7, 2026Updated 2 months ago
- Cookiecutter for snakemake slurm profile☆15Jul 22, 2023Updated 2 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 4 years ago
- Short tutorial on making publication-ready multipanel figures with Matplotlib☆18Sep 19, 2021Updated 4 years ago
- Distributed behavioral experiments☆94Feb 19, 2025Updated last year
- DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT☆15May 20, 2025Updated 10 months ago
- code accompanying Pellegrino*, Stein*, & Cayco-Gajic (2023).☆14Oct 7, 2024Updated last year
- Nature color palette optimized for color-blind individuals☆17Aug 13, 2023Updated 2 years ago
- Unified environment and Issue tracker for all IBL☆15Dec 11, 2025Updated 3 months ago
- Micro-Manager Open Source Microscopy Software (http://valelab.ucsf.edu/~MM/MMwiki/). SVN-tracking Git repository☆15Jul 14, 2016Updated 9 years ago
- Supervised and unsupervised techniques to decode signals from a population of neurons: the case of head-direction cells.☆12Mar 31, 2020Updated 5 years ago
- A simple command line tool to convert a Motive .tak file to .csv☆17Oct 10, 2025Updated 5 months ago
- Data and tools from the publication "Evolution of Cortical Geometry and its Link to Function, Behaviour and Ecology" by Schwartz et al. f…☆14Feb 3, 2025Updated last year
- Design and documentation for the 2p microscope.☆17Feb 20, 2025Updated last year