GoodhillLab / neural-assembly-detectionLinks
Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biology 16:143 (2018) doi: 10.1186/s12915-018-0606-4.
☆12Updated 6 years ago
Alternatives and similar repositories for neural-assembly-detection
Users that are interested in neural-assembly-detection are comparing it to the libraries listed below
Sorting:
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- ☆52Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- motion correction☆17Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Mesoscale activity ephys ingest schema☆11Updated 2 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆14Updated this week
- Dimensionality reduction of calcium-imaged neuronal population activity☆16Updated 2 years ago
- Region Of Interest Classification and Tracking☆26Updated this week
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆97Updated 10 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Updated 2 years ago
- Web app for viewing results of ephys spike sorting☆26Updated last month
- ☆40Updated 4 years ago
- Histology processing☆70Updated 3 weeks ago
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 8 months ago
- analysis tools for large-scale neural recordings☆15Updated 6 months ago
- Revealing neural correlates of behavior without behavioral measurements☆15Updated 5 years ago
- Generate a matrix of predictors corresponding to different behavioral variables and process a regression-based encoding model to obtain t…☆18Updated 6 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Supervised and unsupervised techniques to decode signals from a population of neurons: the case of head-direction cells.☆12Updated 5 years ago
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆32Updated last year
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆52Updated 4 months ago
- Calcium Data Extraction and Analysis☆46Updated 2 years ago
- Package for removing motion artifacts from two-channel imaging☆11Updated 2 years ago
- IaC codebase for the NeuroCAAS Platform☆38Updated last year
- Registration of cells across sessions.☆76Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆152Updated 2 weeks ago
- Analysis package for miniscope data☆14Updated 2 years ago