Alternatives and similar repositories for neural-assembly-detection

Users that are interested in neural-assembly-detection are comparing it to the libraries listed below

• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆97Updated last year
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆34Updated 5 years ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• mesoscale-activity-map / map-ephys
  Mesoscale activity ephys ingest schema
  ☆11Updated 2 years ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆27Updated last week
• catalystneuro / roiextractors
  Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…
  ☆15Updated last week
• Whitlock-Group / HERBS
  ☆52Updated last year
• petersaj / AP_histology
  Histology processing
  ☆72Updated last month
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated 4 months ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆26Updated 2 years ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• MouseLand / neuropop
  analysis tools for large-scale neural recordings
  ☆16Updated 9 months ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last week
• cortex-lab / Rigbox
  A MATLAB toolbox for running behavioral neuroscience experiments and managing data
  ☆32Updated last year
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆66Updated this week
• zhoupc / OASIS_matlab
  ☆41Updated 4 years ago
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆65Updated last year
• PeyracheLab / Class-Decoding
  Supervised and unsupervised techniques to decode signals from a population of neurons: the case of head-direction cells.
  ☆12Updated 5 years ago
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆21Updated last week
• kohth / cilds
  Dimensionality reduction of calcium-imaged neuronal population activity
  ☆17Updated 2 years ago
• etterguillaume / MiniscopeAnalysis
  Analysis package for miniscope data
  ☆14Updated 3 years ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆82Updated last year
• NeurodataWithoutBorders / pynwb-course
  Interactive Python course for using the Neurodata Without Borders format
  ☆15Updated 6 years ago
• zebrain-lab / Toolbox-Romano-et-al
  Computational toolbox for analysis of calcium imaging data of neuronal populations
  ☆33Updated 2 years ago
• neuroinformatics-unit / swc-hpc-pose-estimation
  Pose estimation scripts to be run on the SWC HPC cluster
  ☆12Updated 2 years ago
• bonsai-rx / deeplabcut
  A Bonsai interface for real-time markerless pose estimation using DeepLabCut
  ☆53Updated 7 months ago
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 7 years ago